View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4274_low_6 (Length: 250)
Name: NF4274_low_6
Description: NF4274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4274_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 51 - 241
Target Start/End: Complemental strand, 18372870 - 18372681
Alignment:
| Q |
51 |
tcattaacggttcccttgagcttgtatcatcttcgctgcaagtaactccacgtagaaccacgtgcttgttacgggtgattgttgtagacaacaacgacga |
150 |
Q |
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| T |
18372870 |
tcattaatggttcc-ttgagcttgtaacatcttcgctgcaagttactccacatagaaccatgtgcttgttacgggtgattgttgtagacaacaacgacga |
18372772 |
T |
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| Q |
151 |
ggaatggcctgatgcatttgtgctatagcactgtgtagttgatcttggttgaacaattcagcttctaaactatttgaaatctaagaataat |
241 |
Q |
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| T |
18372771 |
ggaatggcctgatgcatttgtgctatagcactgtgtagttgatcttggttgaacaattcagcttctaaactatttgaaatctaagaataat |
18372681 |
T |
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Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 51 - 225
Target Start/End: Original strand, 1720681 - 1720854
Alignment:
| Q |
51 |
tcattaacggttcccttgagcttgtatcatcttcg-ctgcaagtaactccacgtagaaccacgtgcttgttacgggtgattgttgtagacaacaacgacg |
149 |
Q |
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||||||||||||||||||||| |||| | ||||| ||| |||||||||||| ||||||| || | ||||||| | | | ||||||||||||||| | | |
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| T |
1720681 |
tcattaacggttcccttgagcatgtaccgtcttcttctgtaagtaactccacatagaaccgcgcgtttgttaccgattgtagttgtagacaacaacaaag |
1720780 |
T |
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| Q |
150 |
aggaatggcctgatgcatttgtgctatagcactgtgtagttgatcttggttgaacaattcagcttctaaactattt |
225 |
Q |
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| T |
1720781 |
aggaatggcttgatgcatttttac--tagcattttgttgtcgatcttggttgaagaatttggctcttaaactattt |
1720854 |
T |
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