View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4275-Insertion-2 (Length: 52)
Name: NF4275-Insertion-2
Description: NF4275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4275-Insertion-2 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 38; Significance: 0.0000000000002; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 24369835 - 24369879
Alignment:
| Q |
7 |
actatgatacttcatgtgacagtgatgatgaaaatagacaatgttg |
52 |
Q |
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| T |
24369835 |
actatgatacttcatgtgacagtgatgatgaaaat-gacaatgttg |
24369879 |
T |
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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.00000000005
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 24344548 - 24344592
Alignment:
| Q |
7 |
actatgatacttcatgtgacagtgatgatgaaaatagacaatgttg |
52 |
Q |
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| T |
24344548 |
actatgatacttcatgtgacactgatgatgaaaat-gacaatgttg |
24344592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 24358488 - 24358523
Alignment:
| Q |
16 |
cttcatgtgacagtgatgatgaaaatagacaatgttg |
52 |
Q |
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| T |
24358488 |
cttcatgtgacagtgatgatgaaaat-gacaatgttg |
24358523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 27; E-Value: 0.0000008
Query Start/End: Original strand, 7 - 41
Target Start/End: Original strand, 24351735 - 24351769
Alignment:
| Q |
7 |
actatgatacttcatgtgacagtgatgatgaaaat |
41 |
Q |
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| T |
24351735 |
actatgattcttcatgtgacactgatgatgaaaat |
24351769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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