View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4275_high_11 (Length: 250)
Name: NF4275_high_11
Description: NF4275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4275_high_11 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 15 - 250
Target Start/End: Complemental strand, 19769636 - 19769397
Alignment:
| Q |
15 |
gagggaaactaccgtagattgaagagatataaactaccgtagatgttatctgagaaaacatcacaactaagttattttgagttcgacaaaagtacactca |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19769636 |
gagggaaactaccgtagattgaagagatataaactaccgtagatgttatttgagaaaacatcacaactaagttattttgagttcgacaaaagtacactca |
19769537 |
T |
|
| Q |
115 |
ctcggccacggtattggatacacaattgttaattaaggtaccttcctaaaatacattaactaaaaaacaacaca---taatgctaaacatcggcctttca |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
19769536 |
ctcggccacggtattggatacacaattgttaattaaggtaccttcctaaaatacattaactaaaaaacaacacataataatgctaaacatcggcctttca |
19769437 |
T |
|
| Q |
212 |
taatgaatcataacataatgcataaaca-tggagttatat |
250 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
19769436 |
taatgaatcataacataatgcattaacattggagttatat |
19769397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 32013859 - 32014063
Alignment:
| Q |
18 |
ggaaactaccgtagattgaagagatataaactaccgtagatgttatctgagaaaacatcacaactaagttattttgagttcgacaaaagtacactcactc |
117 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
32013859 |
ggaaactaccgtagattaaagagatataaactaccgtagatgttatttgagaaaacatcacaaataagttattttgagttcgacaaaagtacactcactc |
32013958 |
T |
|
| Q |
118 |
ggccacggtattggatacacaattgttaattaaggtaccttcctaaaatacattaactaaaaaacaacac---ataatgctaaacatcggcctttcataa |
214 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
32013959 |
ggccacggtattggatacacaattcttaattaaggtaccttcataaaatacattaactaaaaaacggcacataataatgctaaacatcggcctttcataa |
32014058 |
T |
|
| Q |
215 |
tgaat |
219 |
Q |
| |
|
||||| |
|
|
| T |
32014059 |
tgaat |
32014063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University