View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4275_high_12 (Length: 250)
Name: NF4275_high_12
Description: NF4275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4275_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 13 - 137
Target Start/End: Complemental strand, 38459684 - 38459560
Alignment:
| Q |
13 |
cagatgttgatttcaacttatgtcagaagtttttattcgaaaatcttggtcattgtaagatcatacaaaaacttctgatttcacacatacttatttgaaa |
112 |
Q |
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| T |
38459684 |
cagatgttgatttcaacttatgtcagaagtttttattcgaaaatcttggtcattgtaagatcatacaaaaacttctgatttcacacatacttatttgaaa |
38459585 |
T |
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| Q |
113 |
aaattattttaggttactctaaaac |
137 |
Q |
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| T |
38459584 |
aaattattttaggttactctaaaac |
38459560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 178
Target Start/End: Complemental strand, 38459541 - 38459501
Alignment:
| Q |
138 |
gtgttattaaatagctgctacagcgccgctatactgctata |
178 |
Q |
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| T |
38459541 |
gtgttattaaatagctgctacagcgccgctatactgctata |
38459501 |
T |
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