View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4275_high_21 (Length: 231)
Name: NF4275_high_21
Description: NF4275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4275_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 28153357 - 28153156
Alignment:
| Q |
17 |
accatctctactatcctcaattgtgttaaactcattaataaataaggtggtttgtggatcaatattatgaacctggttaaatgctttggctgaaaaatct |
116 |
Q |
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| T |
28153357 |
accatctctactatcctcaattgtgttaaactcattaataaataaggtcgtttgtggatcaatattatgaaccttgttaaatgctttggctgaaaaatct |
28153258 |
T |
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| Q |
117 |
tgtccaagtttaccttcaaagaatgagaaatggagattttcattaacaacatcccaaccaataacttggcctttgtatcttcccacaacggaattcattc |
216 |
Q |
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| T |
28153257 |
tgtccaagtttaccttcaaagaatgagaaatggagattttcattaacaacatcccaaccaataacttggcccttgtatcttcccacaacggaattcattc |
28153158 |
T |
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| Q |
217 |
tt |
218 |
Q |
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|| |
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| T |
28153157 |
tt |
28153156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 105 - 213
Target Start/End: Original strand, 8023412 - 8023520
Alignment:
| Q |
105 |
gctgaaaaatcttgtccaagtttaccttcaaagaatgagaaatggagattttcattaacaacatcccaaccaataacttggcctttgtatcttcccacaa |
204 |
Q |
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|||||||| | |||||| | ||||| ||| |||||||||||||| || |||||||||||||||||||||||||||| || || ||||||||| ||||| |
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| T |
8023412 |
gctgaaaagttttgtcccaatttactttcgaagaatgagaaatgtaggttttcattaacaacatcccaaccaataagctgacccttgtatcttgacacaa |
8023511 |
T |
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| Q |
205 |
cggaattca |
213 |
Q |
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|||||||| |
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| T |
8023512 |
tggaattca |
8023520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 110 - 211
Target Start/End: Original strand, 21543713 - 21543814
Alignment:
| Q |
110 |
aaaatcttgtccaagtttaccttcaaagaatgagaaatggagattttcattaacaacatcccaaccaataacttggcctttgtatcttcccacaacggaa |
209 |
Q |
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||||| |||||| ||||||| ||||||||||||| |||| ||||||||||||| ||||||||||||||| | ||| | ||||||||| |||||| ||| |
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| T |
21543713 |
aaaattttgtcctagtttactttcaaagaatgaggaatgcagattttcattaataacatcccaaccaattagctggtccttgtatcttgacacaacagaa |
21543812 |
T |
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| Q |
210 |
tt |
211 |
Q |
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|| |
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| T |
21543813 |
tt |
21543814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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