View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4275_high_22 (Length: 227)
Name: NF4275_high_22
Description: NF4275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4275_high_22 |
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| [»] scaffold0286 (1 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 20 - 217
Target Start/End: Original strand, 2187370 - 2187567
Alignment:
| Q |
20 |
ggtacttccatagaacaatttccattttcctttcaaaatctctccatggtccatactttacaaatatttggaagtggaaagcctcataatttgtcttgga |
119 |
Q |
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| T |
2187370 |
ggtacttccatagaacaatttccattttcctttcaaaatctctccatggtccatactttacaaatatttggaagtggaaagcctcataatttgtcttgga |
2187469 |
T |
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| Q |
120 |
ttaatgctcgtgaaaatgatataccgagctccacggtgtattcaaatgttcaatttcttcatctcatagaatgcaatccgtcaaatgattttcttcga |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2187470 |
ttaatgctcgtgaaaatgatataccgagctccacggtgtattcaaatgttcaatttcttcatctcatagaatgcaatccatcaaatgattttcttcga |
2187567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 26 - 217
Target Start/End: Complemental strand, 2171241 - 2171051
Alignment:
| Q |
26 |
tccatagaacaatttccattttcctttcaaaatctctccatggtccatactttacaaatatttggaagtggaaagcctcataatttgtcttggattaatg |
125 |
Q |
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||||||||||||||||||| ||| |||| ||||||| | |||||||||| ||| |||| || ||||||||| ||||||||| ||||| |||||||||| |
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| T |
2171241 |
tccatagaacaatttccatgttcatttctaaatctcgtgagggtccatactctacgaatagtttgaagtggaatgcctcataaattgtcctggattaatg |
2171142 |
T |
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| Q |
126 |
ctcgtgaaaatgatataccgagctccacggtgtattcaaatgttcaatttcttcatctcatagaatgcaatccgtcaaatgattttcttcga |
217 |
Q |
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| T |
2171141 |
ctcatgagaatgataaaccaagctccatggtgtcttcaaatgttcaatttcttcatctcatgcaatgcaatccgtc-aacgattttcttcga |
2171051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 60
Target Start/End: Complemental strand, 27425272 - 27425235
Alignment:
| Q |
23 |
acttccatagaacaatttccattttcctttcaaaatct |
60 |
Q |
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| T |
27425272 |
acttccataggagaatttccattttcctttcaaaatct |
27425235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0286 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 26 - 217
Target Start/End: Original strand, 12020 - 12210
Alignment:
| Q |
26 |
tccatagaacaatttccattttcctttcaaaatctctccatggtccatactttacaaatatttggaagtggaaagcctcataatttgtcttggattaatg |
125 |
Q |
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||||||||||||||||||| ||| |||| ||||||| | |||||||||| ||| |||| || ||||||||| ||||||||| ||||| |||||||||| |
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| T |
12020 |
tccatagaacaatttccatgttcatttctaaatctcgtgagggtccatactctacgaatagtttgaagtggaatgcctcataaattgtcctggattaatg |
12119 |
T |
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| Q |
126 |
ctcgtgaaaatgatataccgagctccacggtgtattcaaatgttcaatttcttcatctcatagaatgcaatccgtcaaatgattttcttcga |
217 |
Q |
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| T |
12120 |
ctcatgagaatgataaaccaagctccatggtgtcttcaaatgttcaatttcttcatctcatgcaatgcaatccgtc-aacgattttcttcga |
12210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 60
Target Start/End: Original strand, 62091 - 62128
Alignment:
| Q |
23 |
acttccatagaacaatttccattttcctttcaaaatct |
60 |
Q |
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| T |
62091 |
acttccataggagaatttccattttcctttcaaaatct |
62128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 60
Target Start/End: Original strand, 18076283 - 18076320
Alignment:
| Q |
23 |
acttccatagaacaatttccattttcctttcaaaatct |
60 |
Q |
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|||||||||| | ||||||||||||||||||||||||| |
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| T |
18076283 |
acttccataggagaatttccattttcctttcaaaatct |
18076320 |
T |
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