View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4275_high_3 (Length: 391)
Name: NF4275_high_3
Description: NF4275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4275_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 10 - 377
Target Start/End: Complemental strand, 42133869 - 42133509
Alignment:
| Q |
10 |
aagaatatcataggggagttgaactatagctaacnnnnnnnngaagctacaacaagtaccacctattgaggaaaaaagaagagatcttggatccaaacga |
109 |
Q |
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| T |
42133869 |
aagaatatcataggggagttgaactatagctaacaaaaaaaagaagctacaacaagtaccacctattgaggaaaaaagaagagatcttggatccaaacga |
42133770 |
T |
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| Q |
110 |
aaaggactaggattctaggaaatttaggaggaagggaaggaccactcttaattaattgaagtggatgggaaggatatataataatgaaatcattcataaa |
209 |
Q |
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| T |
42133769 |
aaaggactaggattctaggaaatttaggaggaagggaaggaccactcttaattaattgaagtggatgggaagg----ataataatgaaatcattcataaa |
42133674 |
T |
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| Q |
210 |
aggctaagcaattatagccaaagcaaacatagctttggtgcttctcattgcgggcctaacaacatagcttgataagtctttttctactcaactcttttct |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
42133673 |
aggctaagcaattatagccaaagcaaacatagctttggtgcttctcattgcgggcct---aacatagcttgataagtctttttctactcaactcttttct |
42133577 |
T |
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| Q |
310 |
ggctttgaggataagctacctagctagcaacaattaggatcacaaacacatgcaaaaggccaaaatat |
377 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42133576 |
ggctttgaggataagctacctagctagcaacaattaggatcacaaacacatgcaaaaggccaaaatat |
42133509 |
T |
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