View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4275_low_12 (Length: 250)
Name: NF4275_low_12
Description: NF4275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4275_low_12 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 15 - 250
Target Start/End: Complemental strand, 19769636 - 19769397
Alignment:
| Q |
15 |
gagggaaactaccgtagattgaagagatataaactaccgtagatgttatctgagaaaacatcacaactaagttattttgagttcgacaaaagtacactca |
114 |
Q |
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| T |
19769636 |
gagggaaactaccgtagattgaagagatataaactaccgtagatgttatttgagaaaacatcacaactaagttattttgagttcgacaaaagtacactca |
19769537 |
T |
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| Q |
115 |
ctcggccacggtattggatacacaattgttaattaaggtaccttcctaaaatacattaactaaaaaacaacaca---taatgctaaacatcggcctttca |
211 |
Q |
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| T |
19769536 |
ctcggccacggtattggatacacaattgttaattaaggtaccttcctaaaatacattaactaaaaaacaacacataataatgctaaacatcggcctttca |
19769437 |
T |
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| Q |
212 |
taatgaatcataacataatgcataaaca-tggagttatat |
250 |
Q |
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| T |
19769436 |
taatgaatcataacataatgcattaacattggagttatat |
19769397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 32013859 - 32014063
Alignment:
| Q |
18 |
ggaaactaccgtagattgaagagatataaactaccgtagatgttatctgagaaaacatcacaactaagttattttgagttcgacaaaagtacactcactc |
117 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
32013859 |
ggaaactaccgtagattaaagagatataaactaccgtagatgttatttgagaaaacatcacaaataagttattttgagttcgacaaaagtacactcactc |
32013958 |
T |
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| Q |
118 |
ggccacggtattggatacacaattgttaattaaggtaccttcctaaaatacattaactaaaaaacaacac---ataatgctaaacatcggcctttcataa |
214 |
Q |
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| T |
32013959 |
ggccacggtattggatacacaattcttaattaaggtaccttcataaaatacattaactaaaaaacggcacataataatgctaaacatcggcctttcataa |
32014058 |
T |
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| Q |
215 |
tgaat |
219 |
Q |
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| T |
32014059 |
tgaat |
32014063 |
T |
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