View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4275_low_15 (Length: 246)
Name: NF4275_low_15
Description: NF4275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4275_low_15 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 39 - 246
Target Start/End: Complemental strand, 8584081 - 8583874
Alignment:
| Q |
39 |
ttatacgtatatactaaaattgatatctatttctatatacaagtaagcacaataaatttttgaaaaatagaatataattgaattattatatattacatat |
138 |
Q |
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| T |
8584081 |
ttataagtatatactaaaattgatatctatttctatatacaagtaagcacaataaatttttgaaaaatagaatataattgaattattatatattacatat |
8583982 |
T |
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| Q |
139 |
tcttattgtgannnnnnnatgacggtttgttaatccaacccaaaccaactcgtttatcattgggttcggtgtaattcaaatttgacataaaagatatgtc |
238 |
Q |
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| T |
8583981 |
tcttattgtgattttttcatgacgatttgttaatccaacccaaaccaactcgttcatcattgggttcggtgtaatttaaatttgacataaaagatatgtc |
8583882 |
T |
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| Q |
239 |
aaatacat |
246 |
Q |
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| T |
8583881 |
aaatacat |
8583874 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 92
Target Start/End: Complemental strand, 40931056 - 40930992
Alignment:
| Q |
27 |
aaaaatatttgattatacgtatatactaaaattgatatctatttctatatacaagtaagcacaata |
92 |
Q |
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||||||||||||| ||| ||||||| ||||||||||||| ||| |||||||| ||||||||||| |
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| T |
40931056 |
aaaaatatttgataata-gtatatatcaaaattgatatctccttcaatatacaattaagcacaata |
40930992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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