View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4275_low_16 (Length: 246)
Name: NF4275_low_16
Description: NF4275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4275_low_16 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 12907959 - 12907730
Alignment:
| Q |
1 |
ctaccgactgtgctgccttgctgttcggctaggcccccgacgcagatccagtcatcaatacaacagtctgcattggtgtgccagtcggataggggtccgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12907959 |
ctaccgactgtgctgccttgctgttcggctaggcacccgacggagatccagtcatcaatacaacagtctgcattggtgtgccagtcggataggggtccgt |
12907860 |
T |
|
| Q |
101 |
tagggccgccgaaatggtctcttattttgaggagagcagctttatcattggggtggcaggataaatcgtttgaagcgtttgatttagagaagtatatgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12907859 |
tagggccgccgaaatggtctcttattttgaggagagcagctttatcattggggtggcaggataaatcgtttgaagcgtttgatttagagaagtatatgaa |
12907760 |
T |
|
| Q |
201 |
agagaggaagatgagtgttaactggagtag |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
12907759 |
agagaggaagatgagtgttaactggagtag |
12907730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 151
Target Start/End: Original strand, 7727420 - 7727512
Alignment:
| Q |
59 |
tacaacagtctgcattggtgtgccagtcggataggggtccgttagggccgccgaaatggtctcttattttgaggagagcagctttatcattgg |
151 |
Q |
| |
|
|||||||||||| | || ||| ||| ||||| ||| | ||||| |||||||||||||||||||| ||||||||||||| ||||| ||||||| |
|
|
| T |
7727420 |
tacaacagtctgtactgttgtcccaatcggagaggcggccgttggggccgccgaaatggtctctgattttgaggagagtggctttgtcattgg |
7727512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 161
Target Start/End: Original strand, 7731580 - 7731682
Alignment:
| Q |
59 |
tacaacagtctgcattggtgtgccagtcggataggggtccgttagggccgccgaaatggtctcttattttgaggagagcagctttatcattggggtggca |
158 |
Q |
| |
|
|||||||||||| | | ||| ||| ||||| ||| | ||||| |||||||||||||||||||| ||||||||||| | ||||| ||||||| || ||| |
|
|
| T |
7731580 |
tacaacagtctgtaccgttgtcccaatcggaaaggcggccgttggggccgccgaaatggtctctgattttgaggagggtggctttgtcattggcgttgca |
7731679 |
T |
|
| Q |
159 |
gga |
161 |
Q |
| |
|
||| |
|
|
| T |
7731680 |
gga |
7731682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 161
Target Start/End: Original strand, 7739738 - 7739840
Alignment:
| Q |
59 |
tacaacagtctgcattggtgtgccagtcggataggggtccgttagggccgccgaaatggtctcttattttgaggagagcagctttatcattggggtggca |
158 |
Q |
| |
|
|||||||||||| | | ||| ||| ||||| ||| | ||||| |||||||||||||||||||| ||||||||||| | ||||| ||||||| || ||| |
|
|
| T |
7739738 |
tacaacagtctgtaccgttgtcccaatcggaaaggcggccgttggggccgccgaaatggtctctgattttgaggagggtggctttgtcattggcgttgca |
7739837 |
T |
|
| Q |
159 |
gga |
161 |
Q |
| |
|
||| |
|
|
| T |
7739838 |
gga |
7739840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 220
Target Start/End: Original strand, 7713938 - 7714061
Alignment:
| Q |
97 |
ccgttagggccgccgaaatggtctcttattttgaggagagcagctttatcattggggtggcaggataaatcgtttgaagcgtttgatttagagaagtata |
196 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||| || ||||| || | || || |||| | || || | ||||||||||| |||||||| | |
|
|
| T |
7713938 |
ccgttagggccgccaaaatggtctctgattttgaggagggcggctttgtcgtcggcgttgcagaagaagtcatcacttgcgtttgatttggagaagtaga |
7714037 |
T |
|
| Q |
197 |
tgaaagagaggaagatgagtgtta |
220 |
Q |
| |
|
|| |||| ||||||| |||||||| |
|
|
| T |
7714038 |
tggaagaaaggaagaagagtgtta |
7714061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University