View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4275_low_18 (Length: 238)
Name: NF4275_low_18
Description: NF4275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4275_low_18 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 19769101 - 19769322
Alignment:
| Q |
17 |
ataggtgatgttataaaccatgtacgctttgtgcagatgtaaccaagtgacactagacgcactgatgatgttcttttgctgctaatctgttcgatgactt |
116 |
Q |
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| T |
19769101 |
ataggtgatgttataaatcatgtacgctttgtgcagatgtaaccaagtgacactagacgcactgatgatgttcttttgctgctaatctgttcgatgactt |
19769200 |
T |
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| Q |
117 |
gaaaggcagaatgttaattgataagttcaagtttgattgacatattttaagttgaagccttttcctatttaattatggctgataatataaatgttcttgc |
216 |
Q |
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| T |
19769201 |
gaaagacataatgttaattggtaagttcaagtttgattgacatattttaagttgaagccttttcctatttaattatggctgataatataaatgttcttgc |
19769300 |
T |
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| Q |
217 |
ctcacaaattgtttattttatt |
238 |
Q |
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| T |
19769301 |
ctcacaaattgtttattttatt |
19769322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 233
Target Start/End: Complemental strand, 32014357 - 32014143
Alignment:
| Q |
19 |
aggtgatgttataaaccatgtacgctttgtgcagatgtaaccaagtgacactagacgcactgatgatgttcttttgctgctaatctgttcgatgacttga |
118 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
32014357 |
aggtgatgttataagccatgtacgctttgtgcagatgtaaccaagtgacactagacgcactgatgatgttcttttgctgctaatatgttcgatgacttga |
32014258 |
T |
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| Q |
119 |
aaggcagaatgttaattgataagttcaagtttgattgacatattttaagttgaagccttttcctatttaattatggctgataatataaatgttcttgcct |
218 |
Q |
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| T |
32014257 |
aaggcataatgttaattgataagttcaagtctgattgacatattttaaggtgaagccttttcctatttaattatggctgataatataaatgttcttgcct |
32014158 |
T |
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| Q |
219 |
cacaaattgtttatt |
233 |
Q |
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|||||| |||||||| |
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| T |
32014157 |
cacaaactgtttatt |
32014143 |
T |
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