View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4275_low_2 (Length: 400)
Name: NF4275_low_2
Description: NF4275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4275_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 13 - 385
Target Start/End: Complemental strand, 10821796 - 10821422
Alignment:
| Q |
13 |
cagatgatggtcattaatgcgttagcaactcatccttggtttgctatgcacctcatgtgtttctttctgcgcctagcgcatgctgatgagatatcaagga |
112 |
Q |
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| T |
10821796 |
cagatgatggtcattaatgcgttagcaactcatccttggtttgctatgcacctcatgtgtttccttctgcgcctagcgcgtgctgatgagatatcaagga |
10821697 |
T |
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| Q |
113 |
gatgagcaattgtcacgcgcgacgcatggcctcatgcgcctcgcgcataggacttttctannnnnnnn--aaaatgacaagattcttatttgttacatag |
210 |
Q |
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| T |
10821696 |
gatgagcaactgtcacgcgcgacgcatggcctcatgcgcctcgcgcataggacttttctattttttttttaaaattacaagattcttatttgttacatag |
10821597 |
T |
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| Q |
211 |
tttatgatatattgactttttaaacatatatcagttgaatcatcaaaggtgaacttgtaaagttgtacaaaggaatatgaataataatatctctctcaat |
310 |
Q |
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| T |
10821596 |
tttatgatatattgactttttaaacatatatcagttgaatcatcaaaggtgaacttgtaaagttgtacaaaggaatatgaataataatatctctctcaat |
10821497 |
T |
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| Q |
311 |
atacaaattaaagaatattgactcatgttcttacaaaaattacaatgaatttaattacaatacaaatgatcaaag |
385 |
Q |
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| T |
10821496 |
atacaaattaaagaatattgactcatgttcttacaaaaattacaatgaatttaattacaatacaaatgatcaaag |
10821422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 31 - 370
Target Start/End: Original strand, 1628862 - 1629211
Alignment:
| Q |
31 |
gcgttagcaactcatccttggtttgctatgcacctcatgtgtttctttctgcgcctagcgcatgctgatgagatatcaaggagatgagcaattgtcacgc |
130 |
Q |
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| T |
1628862 |
gcgttagcaactactcattggtttggtgtccacctcaagtgtttccttctgcgcctcgcgcatgctgtcgagagatcaaggagatgagcaactgccacag |
1628961 |
T |
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| Q |
131 |
gcgacgcatggcctcatgcgcctcgcgcataggactt--ttcta---nnnnnnnnaaaatgacaagattcttatttgttacatagtttatgatatattga |
225 |
Q |
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|||| |||||||||||||| ||||||||||||||||| || || ||||||||||||| |||||||||||| |||||| ||| ||||||| |
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| T |
1628962 |
gcgatgcatggcctcatgcacctcgcgcataggacttaattttatatatatttttaaaatgacaagatgcttatttgttacttagtttctgacatattga |
1629061 |
T |
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| Q |
226 |
ctttttaaacatatatcagttgaatcatcaaaggtgaacttgtaaagttgtaca-----aaggaatatgaataataatatctctctcaatatacaaatta |
320 |
Q |
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| T |
1629062 |
ctttttaaacatagatccgctggatcatcaaagttgaacttgtaaagtagtacaaaattaaagaatatgaataattatatctctctcaatatacaaatta |
1629161 |
T |
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| Q |
321 |
aagaatattgactcatgttcttacaaaaattacaatgaatttaattacaa |
370 |
Q |
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|||||||||||| ||| ||||| || ||||||||||||||||||||||| |
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| T |
1629162 |
aagaatattgacacattttcttttaagaattacaatgaatttaattacaa |
1629211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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