View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4275_low_20 (Length: 238)
Name: NF4275_low_20
Description: NF4275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4275_low_20 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 101; Significance: 3e-50; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 138 - 238
Target Start/End: Original strand, 38596313 - 38596413
Alignment:
| Q |
138 |
catgcatgcatgcaacgataggttttatagttatgtttcagtcatacaaacactcatttggagcttcgtatttcgacccaatactatatagtcttcacct |
237 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38596313 |
catgcatgcatgcaacgataggttttatagttatgtttcagtcatacaaacactcatttggagcttcgtatttcgacccaatactatatagtcttcacct |
38596412 |
T |
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| Q |
238 |
a |
238 |
Q |
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| T |
38596413 |
a |
38596413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 38596169 - 38596275
Alignment:
| Q |
18 |
gttggatgcacaccataagtaaatttttaaagcagtattctaaatgataaaataaactggggtgctatctataaaatttatgttaattaacaataacaag |
117 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38596169 |
gttggctgcacaccataagtaaatttttaaagcagtattctaaatgataaaataaattggggtgctatctataaaatttatgttaattaacaataacaag |
38596268 |
T |
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| Q |
118 |
taaccga |
124 |
Q |
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||||||| |
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| T |
38596269 |
taaccga |
38596275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 138 - 234
Target Start/End: Complemental strand, 38552500 - 38552404
Alignment:
| Q |
138 |
catgcatgcatgcaacgataggttttatagttatgtttcagtcatacaaacactcatttggagcttcgtatttcgacccaatactatatagtcttca |
234 |
Q |
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| T |
38552500 |
catgcatgcatgcaacgataggttttatagttatgtttcagtcatacaaacactcatttggagcttcgtatttcgacccaatactatatagtcttca |
38552404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 142 - 238
Target Start/End: Original strand, 38060866 - 38060963
Alignment:
| Q |
142 |
catgcatgcaacgataggtttt-atagttatgtttcagtcatacaaacactcatttggagcttcgtatttcgacccaatactatatagtcttcaccta |
238 |
Q |
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||||||||||| |||||||||| |||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38060866 |
catgcatgcaaagataggtttttatagttgtgttttagccatacaaacactcatttggagcttcgtatttcgacccaatactatatagtcttcaccta |
38060963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 24 - 121
Target Start/End: Original strand, 38060729 - 38060826
Alignment:
| Q |
24 |
tgcacaccataagtaaatttttaaagcagtattctaaatgataaa--ataaactggggtgctatctataaaatttatgttaattaacaataacaagtaac |
121 |
Q |
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|||||||||||||||||||| |||||||||| ||| ||||||| | ||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
38060729 |
tgcacaccataagtaaatttgtaaagcagtactctgaatgatatataataaagtggggtgctatcta--aaatttatgttaattaacaataacaagtaac |
38060826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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