View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4275_low_24 (Length: 226)
Name: NF4275_low_24
Description: NF4275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4275_low_24 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 34765499 - 34765274
Alignment:
| Q |
1 |
aatattattaataggttcaatttgaaaatctgtaccaaattttcagaagctaacttttttggatttgagctataacagcttatccagttgcatgcctcaa |
100 |
Q |
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| T |
34765499 |
aatattattaataggttcaatttgaaaatctgtaccaaattttcagaagctaacttttttggatttgagctataacagcttatccagttgcatgcctcaa |
34765400 |
T |
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| Q |
101 |
gagtttggtcatgcaacaagctttacaataagtttgtatttgagctcaaatgaattcacatgtgaaaattattatccgtaaccacaatgagttcattgtc |
200 |
Q |
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| T |
34765399 |
gagtttggtcatgcaacaagctttacaataagtttgtatttgagctcaaatgaattcacatgtgaaaattattatccgtaaccacaatgagttcattgtc |
34765300 |
T |
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| Q |
201 |
acattcctcgttccaacgcttgatcc |
226 |
Q |
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| T |
34765299 |
acattcctcgttccaacacttgatcc |
34765274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 44 - 151
Target Start/End: Complemental strand, 44015408 - 44015301
Alignment:
| Q |
44 |
cagaagctaacttttttggatttgagctataacagcttatccagttgcatgcctcaagagtttggtcatgcaacaagctttacaataagtttgtatttga |
143 |
Q |
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| T |
44015408 |
cagaagctaactcttttggatttgagttataatagcttatctggtagcatacctccagagattggtcatgttacaagcctaacaatcagtttggatttga |
44015309 |
T |
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| Q |
144 |
gctcaaat |
151 |
Q |
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| T |
44015308 |
gctcaaat |
44015301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 6440469 - 6440526
Alignment:
| Q |
160 |
atgtgaaaattattatccgtaaccacaatgagttcattgtcacattcctcgttccaac |
217 |
Q |
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| T |
6440469 |
atgtgaaattcattatcgttaaccacaatgagttcattgtcacattcctcgttccaac |
6440526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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