View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4275_low_25 (Length: 220)

Name: NF4275_low_25
Description: NF4275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4275_low_25
NF4275_low_25
[»] chr3 (9 HSPs)
chr3 (16-206)||(224776-224966)
chr3 (67-207)||(210345-210485)
chr3 (67-206)||(221893-222032)
chr3 (67-202)||(197070-197205)
chr3 (67-206)||(216948-217087)
chr3 (67-202)||(204988-205123)
chr3 (114-201)||(198274-198361)
chr3 (106-206)||(226108-226208)
chr3 (106-202)||(211665-211761)
[»] chr4 (2 HSPs)
chr4 (67-202)||(6903370-6903505)
chr4 (114-177)||(6904803-6904866)
[»] chr5 (1 HSPs)
chr5 (67-206)||(29838223-29838362)
[»] chr1 (1 HSPs)
chr1 (93-205)||(3808344-3808457)


Alignment Details
Target: chr3 (Bit Score: 159; Significance: 8e-85; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 16 - 206
Target Start/End: Original strand, 224776 - 224966
Alignment:
Q  16 ggtttaattctgttccttcatcctcacttggtgaatcatcagcataattgatttcaaccctggaccttttcataggcctaggacacttggtgtttgtttc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||  |||||||||||    
T  224776 ggtttaattctgttccttcatcctcacttggtgaatcatcagcataattgatttcaaccctggaccttttcgtaggtctaggacactctgtgtttgtttc 224875  T
Q  116 tccactagtacttggagtttttaatggatagcaaatctcaacagaagttacatcaaatataataacattaaactttgaattcccttcatat 206  Q
    |||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  224876 tccattagtacttggagttttgagtggatagcaaatctcaacagaagttacatcaaatataataacactaaactttgaattcccttcatat 224966  T

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Target: chr3; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 67 - 207
Target Start/End: Original strand, 210345 - 210485
Alignment:
Q  67 tttcaaccctggaccttttcataggcctaggacacttggtgtttgtttctccactagtacttggagtttttaatggatagcaaatctcaacagaagttac 166  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |    
T  210345 tttcaaccttggaccttttcataggcctaggacactcggtgtttgtttctccactagtacttggagtttttaatggatagcaaatttcaacagaagttgc 210444  T
Q  167 atcaaatataataacattaaactttgaattcccttcatatc 207  Q
    |||||||||||||||  |||| |||||||||||||| ||||    
T  210445 atcaaatataataacgctaaaatttgaattcccttcgtatc 210485  T

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Target: chr3; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 67 - 206
Target Start/End: Original strand, 221893 - 222032
Alignment:
Q  67 tttcaaccctggaccttttcataggcctaggacacttggtgtttgtttctccactagtacttggagtttttaatggatagcaaatctcaacagaagttac 166  Q
    |||||||| ||||||||||| |||| ||| ||||||| ||||||||||||||| || ||||| ||||||| |||||||||||||||||||||||||||||    
T  221893 tttcaaccttggaccttttcctaggactatgacactttgtgtttgtttctccattaatactttgagttttgaatggatagcaaatctcaacagaagttac 221992  T
Q  167 atcaaatataataacattaaactttgaattcccttcatat 206  Q
    ||||||||||| ||||||||||||||||| ||||||||||    
T  221993 atcaaatataacaacattaaactttgaatccccttcatat 222032  T

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Target: chr3; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 67 - 202
Target Start/End: Original strand, 197070 - 197205
Alignment:
Q  67 tttcaaccctggaccttttcataggcctaggacacttggtgtttgtttctccactagtacttggagtttttaatggatagcaaatctcaacagaagttac 166  Q
    |||||||| ||||||||||| |||| |||| ||| || ||||||| ||||||| ||  ||||||||||||||||||||| |||||||||||| |||||||    
T  197070 tttcaaccttggaccttttcgtaggactagcacattttgtgtttggttctccattaacacttggagtttttaatggataacaaatctcaacataagttac 197169  T
Q  167 atcaaatataataacattaaactttgaattcccttc 202  Q
     ||||||||||||||| |||||||||||||||||||    
T  197170 gtcaaatataataacactaaactttgaattcccttc 197205  T

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Target: chr3; HSP #5
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 67 - 206
Target Start/End: Original strand, 216948 - 217087
Alignment:
Q  67 tttcaaccctggaccttttcataggcctaggacacttggtgtttgtttctccactagtacttggagtttttaatggatagcaaatctcaacagaagttac 166  Q
    |||||||| ||||||||||| |||| ||| || |||| || |||||||||||| | |||||| ||||||| ||||||||||||||||||| ||||||| |    
T  216948 tttcaaccttggaccttttcctaggactatgaaactttgtttttgtttctccatttgtactttgagttttgaatggatagcaaatctcaatagaagttgc 217047  T
Q  167 atcaaatataataacattaaactttgaattcccttcatat 206  Q
    |||||||||||  ||| |||||||||||| ||||||||||    
T  217048 atcaaatataaagacactaaactttgaatccccttcatat 217087  T

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Target: chr3; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 67 - 202
Target Start/End: Complemental strand, 205123 - 204988
Alignment:
Q  67 tttcaaccctggaccttttcataggcctaggacacttggtgtttgtttctccactagtacttggagtttttaatggatagcaaatctcaacagaagttac 166  Q
    |||||||||| || |||||  ||||  ||||||| |  || |||||||||||| ||||||| |||||||| | |||||||||||||||||| ||||||||    
T  205123 tttcaacccttgaactttttctaggagtaggacattgtgtatttgtttctccattagtactcggagttttgagtggatagcaaatctcaaccgaagttac 205024  T
Q  167 atcaaatataataacattaaactttgaattcccttc 202  Q
    ||||||||||| |||| ||||||||||||| |||||    
T  205023 atcaaatataacaacactaaactttgaatttccttc 204988  T

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Target: chr3; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 114 - 201
Target Start/End: Original strand, 198274 - 198361
Alignment:
Q  114 tctccactagtacttggagtttttaatggatagcaaatctcaacagaagttacatcaaatataataacattaaactttgaattccctt 201  Q
    |||||| |||||||||||||||| |||| |||  |||||||||||||||||  |||| |||||| |||||||||||||||||||||||    
T  198274 tctccattagtacttggagttttgaatgaataagaaatctcaacagaagttgtatcatatataacaacattaaactttgaattccctt 198361  T

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Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 206
Target Start/End: Original strand, 226108 - 226208
Alignment:
Q  106 tgtttgtttctccactagtacttggagtttttaatggatagcaaatctcaacagaagttacatcaaatataataacattaaactttgaattcccttcata 205  Q
    |||||| ||||||| |||| ||  ||||||  ||||||||  |||||||||||||||||  |||  |||||| |||||| ||||||||||||||||||||    
T  226108 tgtttggttctccattagtcctccgagtttggaatggataagaaatctcaacagaagttctatcgtatataacaacattgaactttgaattcccttcata 226207  T
Q  206 t 206  Q
    |    
T  226208 t 226208  T

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Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 106 - 202
Target Start/End: Original strand, 211665 - 211761
Alignment:
Q  106 tgtttgtttctccactagtacttggagtttttaatggatagcaaatctcaacagaagttacatcaaatataataacattaaactttgaattcccttc 202  Q
    |||||| ||||||| |||| ||  ||||||  ||||||||  |||||||||||||||||  |||  |||||| |||||| |||||||||||||||||    
T  211665 tgtttgcttctccattagtcctccgagtttggaatggataagaaatctcaacagaagttgtatcgtatataacaacattgaactttgaattcccttc 211761  T

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Target: chr4 (Bit Score: 72; Significance: 6e-33; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 67 - 202
Target Start/End: Original strand, 6903370 - 6903505
Alignment:
Q  67 tttcaaccctggaccttttcataggcctaggacacttggtgtttgtttctccactagtacttggagtttttaatggatagcaaatctcaacagaagttac 166  Q
    ||||||||||||| |||||  ||||  ||||||| |  || |||||||||||| ||||||| |||||||| | |||||||||||||||||| ||||||||    
T  6903370 tttcaaccctggaactttttctaggagtaggacattgtgtatttgtttctccattagtactcggagttttgagtggatagcaaatctcaaccgaagttac 6903469  T
Q  167 atcaaatataataacattaaactttgaattcccttc 202  Q
    |||||||||||||||| ||||||||||||| |||||    
T  6903470 atcaaatataataacactaaactttgaatttccttc 6903505  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 177
Target Start/End: Original strand, 6904803 - 6904866
Alignment:
Q  114 tctccactagtacttggagtttttaatggatagcaaatctcaacagaagttacatcaaatataa 177  Q
    |||||| |||||||||||||||| ||||||||  ||||||||||| |||||  |||| ||||||    
T  6904803 tctccattagtacttggagttttgaatggataagaaatctcaacaaaagttggatcatatataa 6904866  T

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Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 67 - 206
Target Start/End: Original strand, 29838223 - 29838362
Alignment:
Q  67 tttcaaccctggaccttttcataggcctaggacacttggtgtttgtttctccactagtacttggagtttttaatggatagcaaatctcaacagaagttac 166  Q
    |||||||| ||||||||||  |||  |||||| | || || |||| ||||||| |||||||||||||||  || |||||| |||| |||||||||||| |    
T  29838223 tttcaaccttggacctttttctagaactaggataatttgtttttggttctccattagtacttggagtttcgaaaggataggaaatttcaacagaagttgc 29838322  T
Q  167 atcaaatataataacattaaactttgaattcccttcatat 206  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  29838323 atcaaatataataacactaaactttgaattcccttcatat 29838362  T

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Target: chr1 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 93 - 205
Target Start/End: Original strand, 3808344 - 3808457
Alignment:
Q  93 ctaggacacttggtgtttgtttctccactagtacttggagtttttaatggatagcaaatctcaacagaagttacatcaaatataataacattaaacttt- 191  Q
    |||||| |||| ||||||| ||||| | |||||||||||||||| || |||||||||||| ||||||||||||| ||||||||||||||| ||||||||     
T  3808344 ctaggatactttgtgtttggttctctattagtacttggagttttgaacggatagcaaatcccaacagaagttacgtcaaatataataacactaaactttg 3808443  T
Q  192 gaattcccttcata 205  Q
    ||||| ||||||||    
T  3808444 gaatttccttcata 3808457  T

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