View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4275_low_26 (Length: 216)
Name: NF4275_low_26
Description: NF4275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4275_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 128; Significance: 2e-66; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 12666865 - 12666687
Alignment:
| Q |
18 |
aactgtaatattctcccccaaaaagcattaannnnnnnncttagaattccttcattattcttctctcaacacaacatacaaatccaacgaaacaacacaa |
117 |
Q |
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| T |
12666865 |
aactgtaatattctcccccaaaaagcattaatttttttcctgagaattccttcattattcttctctcaacacaacatacaaatccaacgaaacaacacaa |
12666766 |
T |
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| Q |
118 |
tacatagataccatatttatttatttttgaaaatacaaagaaacaccacaacacaaatccatttcaccaccgccgaattctt |
199 |
Q |
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|||||||||||||||| ||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
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| T |
12666765 |
tacatagataccatat---tttttttttgaaaatacaaagaaacaacacaacacatatccatttcaccaccgccgaattctt |
12666687 |
T |
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Target: chr7 (Bit Score: 107; Significance: 8e-54; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 667452 - 667627
Alignment:
| Q |
18 |
aactgtaatattctcccccaaaaagcattaannnnnnnncttagaattccttcattattcttctctcaacacaacatacaaatccaacgaaacaacacaa |
117 |
Q |
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||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
667452 |
aactgtaatattctcccccaaaaagcattaatttttttcctcagaattccttcattattcttctctcaacgcaacatacaaatccaacgaaacaacacaa |
667551 |
T |
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| Q |
118 |
tacatagataccatatttatttatttttgaaaatacaaagaaacaccacaacacaaatccatttcaccaccgccgaattctt |
199 |
Q |
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|||||||||||| |||| ||||| |||||||||||||||| ||||||||| ||||||||||||| |||||||||||| |
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| T |
667552 |
tacatagatacc------attttttttttaaaatacaaagaaacaacacaacacatatccatttcaccatcgccgaattctt |
667627 |
T |
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