View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4275_low_5 (Length: 370)
Name: NF4275_low_5
Description: NF4275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4275_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 354
Target Start/End: Original strand, 37563605 - 37563941
Alignment:
| Q |
18 |
atactaagtaaaagacgtacacacctctcacatggattaataacaagattaattttcaaattgcaaatcctggaacccacacagaaaaacaaaagattct |
117 |
Q |
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| T |
37563605 |
atactaagtaaaagacgtacacacctttcacatggattaataacaagattaattttcaaattgcaaatcctggaacccacacagaaaaacaaaatattct |
37563704 |
T |
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| Q |
118 |
gagcaaatctatgagaaaggtaaaaatctcctccttgttttgaccaagtaaaagatcaaattctgaccaagataactttaaaaatgttaaagccatgtac |
217 |
Q |
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| T |
37563705 |
gagcaaatctatgagaaaggtaaaaatctcctccttgttttgaccaagtaaaagatcaaattctgaccaagataactttaaaaatgttaaagccatgtac |
37563804 |
T |
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| Q |
218 |
agcaatctagggctnnnnnnncaaaacaatcattaaaatactagcaaaaccatgtgttccttgttgggacataacacaattaattaactgctcttatccg |
317 |
Q |
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| T |
37563805 |
agcaatctagggctaaaaaaacaaaacaatcattaaaatactagcaaaaccatgtgttccttgttgggacataacacaattaattaactgctcttatccg |
37563904 |
T |
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| Q |
318 |
gtgaaaattccgatattgaagtattcagtctcacatg |
354 |
Q |
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| T |
37563905 |
gtgaaaattcccatattgaagtattcagtctcacatg |
37563941 |
T |
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