View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4275_low_6 (Length: 327)
Name: NF4275_low_6
Description: NF4275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4275_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 227
Target Start/End: Complemental strand, 1236513 - 1236297
Alignment:
| Q |
14 |
ctttcatcactaaaatagagccacctttcatagattcagttcatgtagaatttgctataaatacgtaactcaacaattcttc---ataatcacaattcac |
110 |
Q |
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| T |
1236513 |
ctttcatcactaaaatagagccacctttcatagattcagttcatgtagaatttgctataaatacgtaactcaacaattcttcttcataatcacaattcac |
1236414 |
T |
|
| Q |
111 |
ataacttttttgcttttagtaaagcattgagtaatggcaaaaaattataacatcaatatgctcttcttagttgtgtttcttcttgtacaaagcaaggtat |
210 |
Q |
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| T |
1236413 |
ataacttttttgcttttagtaaagctttgagtaatggcaaaaaattataacatcaatatgctcttcttagttgtgtttcttcttgtacaaagcaaggtat |
1236314 |
T |
|
| Q |
211 |
attgacatacttctctc |
227 |
Q |
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||||||||||||||||| |
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| T |
1236313 |
attgacatacttctctc |
1236297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 14 - 219
Target Start/End: Complemental strand, 41969450 - 41969245
Alignment:
| Q |
14 |
ctttcatcactaaaatagagccacc-tttcatagattcagttcatgtagaatttgctataaatacgtaactcaacaattcttcataatcacaattcacat |
112 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||| |||||| | ||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
41969450 |
ctttcatcactaaaatagagccaccctttcatagattcagttcaagtagaaat-gctataaatacgtaactcaacgtttcttcataatcacaattcacat |
41969352 |
T |
|
| Q |
113 |
aacttttttgcttttagtaaagcattgagtaatggcaaaaaattataacatcaatatgctcttcttagttgtgtttcttcttgtacaaagcaaggtatat |
212 |
Q |
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||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
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| T |
41969351 |
aacttttttgcttttcgtaaagctttgagtaatggcaaaaaattataacatcaatatgctcttcttagttgtgtttcttcttgtacagagcaaggtaaat |
41969252 |
T |
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| Q |
213 |
tgacata |
219 |
Q |
| |
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|||||| |
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| T |
41969251 |
cgacata |
41969245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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