View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4275_low_9 (Length: 299)
Name: NF4275_low_9
Description: NF4275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4275_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 39 - 285
Target Start/End: Original strand, 2555929 - 2556175
Alignment:
| Q |
39 |
tcactacgtcttcacgaatttctctctctcccaaaatctaacgtgtcttctagaaaacaaagggcaagaccattctcaccggtgatgaatccatagttgc |
138 |
Q |
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| T |
2555929 |
tcactacgtcttcacgaatttctctctctcccacaatctaacgtgtcttctagaaaacaaagggcaagaccattctcaccggtgatgaatccatagttgc |
2556028 |
T |
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| Q |
139 |
cgcttccatggttgtccttaacatcgtcgtaatggaagaaaccaccgaaataaatctccagcttcatgtttcactttctcaattggatagcaccacaata |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2556029 |
cgcttccatggttgtccttaacatcgtcgtaatggaagaaaccaccgaaataaatctccagcttcatgtttcactttctcaattggatagcaccacaata |
2556128 |
T |
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| Q |
239 |
ctacaaatggcaaaaatctgaaaaagtttcatttttcaggaggagat |
285 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2556129 |
ctacaaatgacaaaaatctgaaaaagtttcatttttcaggaggagat |
2556175 |
T |
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