View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4276-Insertion-11 (Length: 105)

Name: NF4276-Insertion-11
Description: NF4276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4276-Insertion-11
NF4276-Insertion-11
[»] chr4 (5 HSPs)
chr4 (3-105)||(30032095-30032197)
chr4 (3-105)||(30048341-30048443)
chr4 (3-105)||(30062682-30062784)
chr4 (5-105)||(30220479-30220579)
chr4 (8-105)||(30228485-30228582)


Alignment Details
Target: chr4 (Bit Score: 95; Significance: 5e-47; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 5e-47
Query Start/End: Original strand, 3 - 105
Target Start/End: Original strand, 30032095 - 30032197
Alignment:
Q  3 agtgatatggttgacaaggtaacaggttgagattcatttccttcaaatcctgaccttataggtgttttgtcatcttcaatcattcttgtcttaattatgc 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  30032095 agtgatatggttgacaaggtaacaggttgagattcatttccttcatatcctgatcttataggtgttttgtcatcttcaatcattcttgtcttaattatgc 30032194  T
Q  103 ttg 105  Q
    |||    
T  30032195 ttg 30032197  T

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Target: chr4; HSP #2
Raw Score: 83; E-Value: 8e-40
Query Start/End: Original strand, 3 - 105
Target Start/End: Original strand, 30048341 - 30048443
Alignment:
Q  3 agtgatatggttgacaaggtaacaggttgagattcatttccttcaaatcctgaccttataggtgttttgtcatcttcaatcattcttgtcttaattatgc 102  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| | |||||    
T  30048341 agtgatatggttgacaaggtaacaggatgagattcatttccttcatatcctgaccttataggtgttttgtcatcttcaatcattgttgtcttcaatatgc 30048440  T
Q  103 ttg 105  Q
    |||    
T  30048441 ttg 30048443  T

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Target: chr4; HSP #3
Raw Score: 83; E-Value: 8e-40
Query Start/End: Original strand, 3 - 105
Target Start/End: Original strand, 30062682 - 30062784
Alignment:
Q  3 agtgatatggttgacaaggtaacaggttgagattcatttccttcaaatcctgaccttataggtgttttgtcatcttcaatcattcttgtcttaattatgc 102  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| | |||||    
T  30062682 agtgatatggttgacatggtaacaggttgagattcatttccttcatatcctgaccttataggtgttttgtcatcttcaatcattgttgtcttcaatatgc 30062781  T
Q  103 ttg 105  Q
    |||    
T  30062782 ttg 30062784  T

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Target: chr4; HSP #4
Raw Score: 65; E-Value: 4e-29
Query Start/End: Original strand, 5 - 105
Target Start/End: Complemental strand, 30220579 - 30220479
Alignment:
Q  5 tgatatggttgacaaggtaacaggttgagattcatttccttcaaatcctgaccttataggtgttttgtcatcttcaatcattcttgtcttaattatgctt 104  Q
    ||||||| ||||||| |||| ||| ||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||    
T  30220579 tgatatgtttgacaaagtaaaaggctgagattcagttccttcatatcctgatcttataggtgttttgtcatcttcaatcattcttgtcttgattaagctt 30220480  T
Q  105 g 105  Q
    |    
T  30220479 g 30220479  T

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Target: chr4; HSP #5
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 30228485 - 30228582
Alignment:
Q  8 tatggttgacaaggtaacaggttgagattcatttccttcaaatcctgaccttataggtgttttgtcatcttcaatcattcttgtcttaattatgcttg 105  Q
    |||| |||||||| ||| ||| |||||||||   |||||| |||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||    
T  30228485 tatgtttgacaagataaaaggctgagattcagcaccttcatatcctgaccttataggtgttttgtcatctttaatcattcttgtcttcaatatgcttg 30228582  T

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