View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4276-Insertion-5 (Length: 280)

Name: NF4276-Insertion-5
Description: NF4276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4276-Insertion-5
NF4276-Insertion-5
[»] chr4 (1 HSPs)
chr4 (1-280)||(29138714-29138995)


Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 29138995 - 29138714
Alignment:
Q  1 gtttcaaatgacttgttcttcatgtctactctgtccataaagtgtgtgaagtgtcccttttgtcttcactgttttcttgtccttcacactttggtggaat 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29138995 gtttcaaatgacttgttctttatgtctactctgtccataaagtgtgtgaagtgtcccttttgtcttcactgttttcttgtccttcacactttggtggaat 29138896  T
Q  101 tttatttactaccaaaattacctttctctctctacgcttttctaatgaaaattacacttgatttgggaaga--aaaatgttattaagacactaactaaaa 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||    
T  29138895 tttatttactaccaaaattacctttctctctctacgcttttctaatgaaaattacacttgatttgggaagaaaaaaatgttattaagacaccaactaaaa 29138796  T
Q  199 tatgtttttcaacattatttattgattgagattgaaatttaaatatgtttagtaaattatttaaatgagagaaattacattc 280  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29138795 tatgtttttcaacatcatttattgattgagattgaaatttaaatatgtttagtaaattatttaaatgagagaaattacattc 29138714  T

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