View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4276_high_1 (Length: 358)
Name: NF4276_high_1
Description: NF4276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4276_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 10 - 343
Target Start/End: Original strand, 43658903 - 43659236
Alignment:
| Q |
10 |
aagaaaattataactttcttagttttagtttacaatcctctgtcgtggtgccccatggtgtcgtgtagtgcgtatgaattatcatccagcctactgataa |
109 |
Q |
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| T |
43658903 |
aagaaaattataactttcatagttttagtttacaatcctgtgtcgtggtgccccatggtgtcgtgtagtgcgtatgaattatcatccagtttatagataa |
43659002 |
T |
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| Q |
110 |
acttatcaattttttcttcacattagtgaaacttgccttcaaacaaccgttcttattcaatccactacaagtaatcacataacacattagaaaacttaaa |
209 |
Q |
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| T |
43659003 |
acttatcaattttttcttcacattagtgaaacttgccttcaaacaaccgttttcattcaatccactacaagtaatcacatagcacattaaaaaacttaaa |
43659102 |
T |
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| Q |
210 |
attaatttcataactcgatatagaacaagaataatataaggaatgtcataaaatgcaattgttagcccaaaagaattggtgcaagaacttatttagaacn |
309 |
Q |
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| T |
43659103 |
attaatttcataactcgatatagaacaagaataatataaggaatgtcataaaatgcaattgttagcccagcagaattggtgcaagaacttatttagaact |
43659202 |
T |
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| Q |
310 |
nnnnnnnngggtgcaagaacttatccatgaaatt |
343 |
Q |
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| T |
43659203 |
ttttttttgggtgcaagaacttatccatgaaatt |
43659236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 10 - 264
Target Start/End: Complemental strand, 34314151 - 34313898
Alignment:
| Q |
10 |
aagaaaattataactttcttagttttagtttacaatcctctgtcgtggtgccccatggtgtcgtgtagtgcgtatgaattatcatccagcctactgataa |
109 |
Q |
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| T |
34314151 |
aagaaaattataactttcatggttttagtttgcaattttgtgtcgtggtgcccggtggtg-cgtatagtgtgtatgcatcatcatgcagcctatcggtaa |
34314053 |
T |
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| Q |
110 |
acttatcaattttttcttcacattagtgaaactt-gccttcaaacaaccgttcttattcaatccactacaagtaatcacataacacattagaaaacttaa |
208 |
Q |
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| T |
34314052 |
accaatcaattttttcttcatattaatgaaacttcgccttcaaacaatcgttctcattcaatccactacaagtaatcacataacacattagaaaactt-a |
34313954 |
T |
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| Q |
209 |
aattaatttcataactcgatatagaacaagaataatataaggaatgtcataaaatg |
264 |
Q |
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| T |
34313953 |
aattaatttcataacttgaaataaaacaagaataatacaaggaatatcataaaatg |
34313898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 197 - 287
Target Start/End: Complemental strand, 32794204 - 32794113
Alignment:
| Q |
197 |
tagaaaacttaaaattaatttca-taactcgatatagaacaagaataatataaggaatgtcataaaatgcaattgttagcccaaaagaattg |
287 |
Q |
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| T |
32794204 |
tagaaaacttaaaattaattttaataactcgaaatggaacaagaataatatgaggaatgtcgcaaaatgtaattgttatcccaaaataattg |
32794113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 177 - 262
Target Start/End: Original strand, 3762394 - 3762481
Alignment:
| Q |
177 |
caagtaatcacataacacat--tagaaaacttaaaattaatttcataactcgatatagaacaagaataatataaggaatgtcataaaa |
262 |
Q |
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|||||||||||||| ||| | |||||||||| ||| |||||||||||||||| ||||| |||||||||| |||||| |||||||| |
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| T |
3762394 |
caagtaatcacatatcacttagtagaaaacttgaaactaatttcataactcgaattagaaaaagaataatacgaggaatttcataaaa |
3762481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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