View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4276_high_2 (Length: 334)
Name: NF4276_high_2
Description: NF4276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4276_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 19 - 330
Target Start/End: Original strand, 37735510 - 37735843
Alignment:
| Q |
19 |
ggttatactgatgttttctttttctttctatgaataggttctggattcaaatcaattgatatgtacaccagtggattttttagtgcggaaataaaactac |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37735510 |
ggttatactgatgttttctttttctttctatgaataggttctggattcaaatccattgatatgtacaccagtggattttttagtgcggaaataaaactac |
37735609 |
T |
|
| Q |
119 |
catccaattattttgctactgctggtgtttgtgtcaccttttatgtaagttgtcacc----------------------ttttgatttgatctcattaaa |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
37735610 |
catccaattattttgctactgctggtgtttgtgtcaccttttatgtaagttgtcaccttttgatttgatctcattcaatttttgatttgatctcattaaa |
37735709 |
T |
|
| Q |
197 |
aaatggaatattatcatttaaatccacaattcctgctggtgtttaaatgggatattatcaatcaaatatttaattaaagannnnnnnnaatcacacccca |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
37735710 |
aaatggaatattatcatttaaatccacaattcctgccggtgtttaaatggaatattatcaatcaaatatttaattaaagattttttttaatcacacccca |
37735809 |
T |
|
| Q |
297 |
aatattttcaataattaccttttgtctttctctc |
330 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |
|
|
| T |
37735810 |
aatattttcaatcattaccttttgtctttctctc |
37735843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 19 - 171
Target Start/End: Original strand, 37725747 - 37725899
Alignment:
| Q |
19 |
ggttatactgatgttttctttttctttctatgaataggttctggattcaaatcaattgatatgtacaccagtggattttttagtgcggaaataaaactac |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
37725747 |
ggttatactgatgttttctttttctttctatgaataggttctggattcaaatccattgatatgtacaccagtgcattttttagtgcgaaaataaaactac |
37725846 |
T |
|
| Q |
119 |
catccaattattttgctactgctggtgtttgtgtcaccttttatgtaagttgt |
171 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37725847 |
catctaattattttgctactgctggtgtttgtgtcaccttttatgtaagttgt |
37725899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 37734819 - 37734871
Alignment:
| Q |
175 |
cttttgatttgatctcattaaaaaatggaatattatcatttaaatccacaatt |
227 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
37734819 |
cttttgatttgatctcattaaaatatgggatattatcatttaaatccacaatt |
37734871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 37726010 - 37725959
Alignment:
| Q |
176 |
ttttgatttgatctcattaaaaaatggaatattatcatttaaatccacaatt |
227 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
37726010 |
tttttatttgatctcattaaaaaatgggatattatcatttaaatccacaatt |
37725959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 37725058 - 37725108
Alignment:
| Q |
176 |
ttttgatttgatctcattaaaaaatggaatattatcatttaaatccacaatt |
227 |
Q |
| |
|
||||||||||||||||| |||| |||| |||||||||||||||||||||||| |
|
|
| T |
37725058 |
ttttgatttgatctcat-aaaatatgggatattatcatttaaatccacaatt |
37725108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University