View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4276_high_3 (Length: 261)
Name: NF4276_high_3
Description: NF4276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4276_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 11 - 246
Target Start/End: Complemental strand, 10019857 - 10019622
Alignment:
| Q |
11 |
cacagacattaaattttgagtaaaaaattaactctattgttcgtaatttataaacattaatgtaataaaaaagatcaattggacgaacatgtgtctacat |
110 |
Q |
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| T |
10019857 |
cacaaacattaaattttgagtaaaaaattaacactattgttcgtaatttataaacattaatgtaataaaaaagatcaattggacgaacatgtgtctacat |
10019758 |
T |
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| Q |
111 |
gaatactagtaacaatatcccgatgctagtaacattgacaaatatataattttttgtttgttttcaccctagcatataccgcaaattattttatcctatg |
210 |
Q |
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| T |
10019757 |
gaatactagtaacaatatcccgatgctagtaacattgacaaatatataattttttgtttgttttcaccctagcatataccacaaattattttatcctatg |
10019658 |
T |
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| Q |
211 |
atatcaaactctgttatcggtcaaatccgtaaattt |
246 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
10019657 |
atatcaaactctgttatcggtcaaatccgtaaattt |
10019622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 11 - 246
Target Start/End: Complemental strand, 3330954 - 3330717
Alignment:
| Q |
11 |
cacagacattaaattttgagtaaaaaattaactctattgttcgtaatttataaacattaatgtaataaaaaa-gatcaattggacgaacatgtgtctaca |
109 |
Q |
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|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
3330954 |
cacaaacattaaattttgagtaaaaaattaacactattgttcgtaatttataaacattaatgtaataaaaaaagatcaattggacgaacatgtgtctaca |
3330855 |
T |
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| Q |
110 |
tgaatactagtaacaatatcccgatgctagtaacattgacaaatatataattttttg-tttgttttcaccctagcatataccgcaaattattttatccta |
208 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
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| T |
3330854 |
tgaatactagtaacaatatcccaatgctagtaacattgacaaatatataattttttgttttgttttcaccctagcatataccacaaattattttatccta |
3330755 |
T |
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| Q |
209 |
tgatatcaaactctgttatcggtcaaatccgtaaattt |
246 |
Q |
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||||||||||||||||||| ||| |||||||||||||| |
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| T |
3330754 |
tgatatcaaactctgttattggtgaaatccgtaaattt |
3330717 |
T |
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