View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4276_low_11 (Length: 227)
Name: NF4276_low_11
Description: NF4276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4276_low_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 15 - 210
Target Start/End: Complemental strand, 9917513 - 9917318
Alignment:
| Q |
15 |
ataggcaagagatgaaatagattttgctgcaatttttctcttacaaggtggcagtcaagttcaatgtgtttagttctctcgtgaaatgatgaattcgcag |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9917513 |
ataggcaagagatgaaatagattttgctgcaatttttctcttacaaggtggcagtcaagttcaatgtgtttagttctctcgtgaaatgatgaattcgcag |
9917414 |
T |
|
| Q |
115 |
ctatatgtcgggctgattgactatcacagtatagcaaagctgttggtatgtcaggaagcttgaagtcttttaaaagatatgtcaaccactgtaatt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9917413 |
ctatatgtcgggctgattgactatcacagtatagtaaagttgttggtatgtcaggaagcttgaagtcttttaaaagatatgtcaaccactgtaatt |
9917318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 145
Target Start/End: Original strand, 21751742 - 21751861
Alignment:
| Q |
26 |
atgaaatagattttgctgcaatttttctcttacaaggtggcagtcaagttcaatgtgtttagttctctcgtgaaatgatgaattcgcagctatatgtcgg |
125 |
Q |
| |
|
||||||||| |||||||| |||||||||| || | |||||| || | ||| |||||||| || || || ||||| |||||||| ||||||||||| || |
|
|
| T |
21751742 |
atgaaatagtttttgctgtaatttttctcgcactatgtggcaatctaattcgatgtgttttgtcctttcatgaaaagatgaatttgcagctatatggcgt |
21751841 |
T |
|
| Q |
126 |
gctgattgactatcacagta |
145 |
Q |
| |
|
||||| || || |||||||| |
|
|
| T |
21751842 |
gctgactggctgtcacagta |
21751861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 145
Target Start/End: Complemental strand, 33581793 - 33581674
Alignment:
| Q |
26 |
atgaaatagattttgctgcaatttttctcttacaaggtggcagtcaagttcaatgtgtttagttctctcgtgaaatgatgaattcgcagctatatgtcgg |
125 |
Q |
| |
|
||||||||| |||||||| |||||||||| | | | |||||| || | ||| |||||||| || || || ||||| |||||||| ||||||||||| || |
|
|
| T |
33581793 |
atgaaatagtttttgctgtaatttttctcgtcctatgtggcaatctaattcgatgtgttttgtcctttcatgaaaagatgaatttgcagctatatggcgt |
33581694 |
T |
|
| Q |
126 |
gctgattgactatcacagta |
145 |
Q |
| |
|
||||| || || |||||||| |
|
|
| T |
33581693 |
gctgactggctgtcacagta |
33581674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University