View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4276_low_12 (Length: 223)
Name: NF4276_low_12
Description: NF4276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4276_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 35666430 - 35666221
Alignment:
| Q |
1 |
cttcttcttatatattaataacaaaaaatttgaagaatcttatttattaatattcagagttcaggtagtgccggtttctgagggctcctatattttctga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
35666430 |
cttcttcttatatattaataacaaaaaatttgaagaatcttatttattaatattcagagttcaggtagagccggtttctgagggctcctatattttctga |
35666331 |
T |
|
| Q |
101 |
agcattctagttcagggttgtcttggagtaagactgactatctggaatcgatttattcctccttcaaaaatcttttcttctttggagattgttacataaa |
200 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35666330 |
agcattctagttcagggttgtcttggagtaa----gactatctggaatcgatttattcctccttcaaaaatcttttcttctttggagattgttacataaa |
35666235 |
T |
|
| Q |
201 |
aaggtactgatgat |
214 |
Q |
| |
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|||||||||||||| |
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| T |
35666234 |
aaggtactgatgat |
35666221 |
T |
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