View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4276_low_4 (Length: 301)
Name: NF4276_low_4
Description: NF4276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4276_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 11 - 285
Target Start/End: Original strand, 34640854 - 34641128
Alignment:
| Q |
11 |
cagagatagtacaccgagagttggtgtgagtgggtcaaaaccagaaccagcagaggcaaaactaactcctgtcataagctcttcatcactaagatttgga |
110 |
Q |
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| T |
34640854 |
cagagatagtactccgagagttggtgtgagtgggtcaaaaccagaaccagcagaggcaaaactaactcctgtcataagctcttcatcactaagatttgga |
34640953 |
T |
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| Q |
111 |
tccaaatatggtggcaccaactctttcaggcctaaatatgaagctgtacaatccaaatatatgtatagaacatcaatcaaacaaggtctatactaagaga |
210 |
Q |
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| T |
34640954 |
tccaaatatggtggcaccaactctttcaggcctaaatatgaagctgtacaatccaaatatatgtatagaacatcaatcaaacaaggtctatactaagaga |
34641053 |
T |
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| Q |
211 |
aatcaatttctacattctcttaagttactatgtccatggcatgtcacctcagcggtaagtgtttgaccttataac |
285 |
Q |
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| T |
34641054 |
aatcaatttctacattctcttaagttactatgtccatggcatgtcacctcaacggtaagtgtttgaccttataac |
34641128 |
T |
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Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 32 - 95
Target Start/End: Complemental strand, 4440190 - 4440127
Alignment:
| Q |
32 |
tggtgtgagtgggtcaaaaccagaaccagcagaggcaaaactaactcctgtcataagctcttca |
95 |
Q |
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|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4440190 |
tggtgtaagagggtcaaaaccagaaccagcagaggcaaaactaactcctgtcataagctcttca |
4440127 |
T |
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