View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4276_low_9 (Length: 250)
Name: NF4276_low_9
Description: NF4276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4276_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 37735993 - 37736123
Alignment:
| Q |
1 |
attttaaaaagtaaacaatttagtttgcagatttattcatccaataattgaacaacaccgta----annnnnnnnngataaaccaacaccacaaattgaa |
96 |
Q |
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| T |
37735993 |
attttaaaaagtaaacaatttagtttgcagatttattcatccaataattgaacaacaccgtattttttttttctttgataaaccaacaccacaaattgaa |
37736092 |
T |
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| Q |
97 |
atgataagaaatggaataatttaacaacacc |
127 |
Q |
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| T |
37736093 |
atgataagaaatggaataatttaacaacacc |
37736123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 124 - 245
Target Start/End: Original strand, 37736145 - 37736268
Alignment:
| Q |
124 |
cacctggctgaattgattccagtcaaattttcccaannnnnnnnnnn--agcgttgctcgaaaatggaatgtaatacacgtacaattttgccaaaataga |
221 |
Q |
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| T |
37736145 |
cacctggctgaattgattccagtcaaattttcccaatttttttttttttagcgttgctcgaaaatggaatgtaatacacgtacaattttgccaaaataga |
37736244 |
T |
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| Q |
222 |
ttaacctaccttagttcatctcac |
245 |
Q |
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| T |
37736245 |
ttaacctaccttagttcatttcac |
37736268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 41910867 - 41910812
Alignment:
| Q |
1 |
attttaaaaagtaaacaatttagtttgcagatttattcatccaataattgaacaac |
56 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
41910867 |
attttaaaaagtaaacaatttagtttgcagatttatccatcccataattgaacaac |
41910812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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