View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4277-Insertion-19 (Length: 97)
Name: NF4277-Insertion-19
Description: NF4277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4277-Insertion-19 |
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| [»] chr7 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 75; Significance: 4e-35; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 4e-35
Query Start/End: Original strand, 7 - 97
Target Start/End: Complemental strand, 34552489 - 34552399
Alignment:
| Q |
7 |
atgtgcatatacaaagcacacaaatcattccattgcatcatattcaaatctcgatggccctggtgttagccattttgaagaaaacaaccca |
97 |
Q |
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| T |
34552489 |
atgtgcatatacaaagcacacaaatcattccactgcatcatatttaaatcttgatggcactggtgttagccattttgaagaaaacaaccca |
34552399 |
T |
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Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-18
Query Start/End: Original strand, 11 - 97
Target Start/End: Complemental strand, 34564212 - 34564126
Alignment:
| Q |
11 |
gcatatacaaagcacacaaatcattccattgcatcatattcaaatctcgatggccctggtgttagccattttgaagaaaacaaccca |
97 |
Q |
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| T |
34564212 |
gcatatacaaagcaaaacaatcatttcgttgcgtcatattcaaatctcgatggcaatggtgttagcgattttgaagaaaataaccca |
34564126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 9 - 97
Target Start/End: Original strand, 132387 - 132475
Alignment:
| Q |
9 |
gtgcatatacaaagcacacaaatcattccattgcatcatattcaaatctcgatggccctggtgttagccattttgaagaaaacaaccca |
97 |
Q |
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| T |
132387 |
gtgcatatacaaagcacaacaatcattatgttgcatcatattcaaatcttgatggcactggtgttagcgattttgacgaaaactaccca |
132475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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