View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4277-Insertion-21 (Length: 159)
Name: NF4277-Insertion-21
Description: NF4277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4277-Insertion-21 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 134; Significance: 4e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 4e-70
Query Start/End: Original strand, 6 - 143
Target Start/End: Original strand, 42176667 - 42176804
Alignment:
| Q |
6 |
atctactatcaattctttagttgcaacaaattatcaaaggcttaatgcaatctaaaaaggactaacatcaatcattcgtaaaatggtaattaatgcgtaa |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42176667 |
atctactatcaattctttagttgcaacaaattatcaaaggcttaatgcaatctaaaaaggactaacatcaatcattcgtaaaatggtaattaatgcgtaa |
42176766 |
T |
|
| Q |
106 |
aaactagctctacttttcaagttcttgtcacaattttc |
143 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
42176767 |
aaactagctctacttttcaagttcttgtcagaattttc |
42176804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University