View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4277-Insertion-27 (Length: 170)
Name: NF4277-Insertion-27
Description: NF4277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4277-Insertion-27 |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 1e-79; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 1e-79
Query Start/End: Original strand, 5 - 166
Target Start/End: Complemental strand, 23700989 - 23700828
Alignment:
| Q |
5 |
ttaatgattgttcagctatgttgttgaatgatgaaaagggaattgtgactgcttcggaatgtccacattgtcatagattgttctgtgcacaatgtaaggt |
104 |
Q |
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| T |
23700989 |
ttaatgattgttcagctatgttgttgaatgatgaaaagggaattgtgactgcttcggaatgtccacattgtcatagattgttctgtgcacaatgtaaggt |
23700890 |
T |
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| Q |
105 |
ttcatggcacacaggtgttggttgtaaagagtttcaaagcttgaaagtcggcgagcgaggga |
166 |
Q |
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| T |
23700889 |
ttcatggcacacaggtgttgattgtaaagtgtttcaaagcttgaaagacggcgagcgaggga |
23700828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 8e-75
Query Start/End: Original strand, 5 - 170
Target Start/End: Original strand, 23694812 - 23694977
Alignment:
| Q |
5 |
ttaatgattgttcagctatgttgttgaatgatgaaaagggaattgtgactgcttcggaatgtccacattgtcatagattgttctgtgcacaatgtaaggt |
104 |
Q |
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| T |
23694812 |
ttaatgattgttcagctatgttgttgaatgatgaaaagggaattgtgactgcttcggaatgtccacattgtcatagattgttctgtgcacaatgtaaggt |
23694911 |
T |
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| Q |
105 |
ttcatggcacacaggtgttggttgtaaagagtttcaaagcttgaaagtcggcgagcgagggaggga |
170 |
Q |
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| T |
23694912 |
ttcatggcacataggtgttgattgtaaagagtttctaagcttgaaagatggtgagcgagggaggga |
23694977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 84; E-Value: 3e-40
Query Start/End: Original strand, 5 - 168
Target Start/End: Original strand, 23696943 - 23697106
Alignment:
| Q |
5 |
ttaatgattgttcagctatgttgttgaatgatgaaaagggaattgtgactgcttcggaatgtccacattgtcatagattgttctgtgcacaatgtaaggt |
104 |
Q |
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| T |
23696943 |
ttaatgattgttcagctatgttggtgaatgatgaagaggaagttgtaaccgtttctgagtgtcctcattgtaatagattattttgtgcacaatgtaaggt |
23697042 |
T |
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| Q |
105 |
ttcatggcacacaggtgttggttgtaaagagtttcaaagcttgaaagtcggcgagcgagggagg |
168 |
Q |
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| T |
23697043 |
ttcatggcactctggtgttgattgtagagagtttcaaagcttggaagatggcgagcgagggagg |
23697106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 142
Target Start/End: Complemental strand, 8149132 - 8148995
Alignment:
| Q |
5 |
ttaatgattgttcagctatgttgttgaatgatgaaaagggaattgtgactgcttcggaatgtccacattgtcatagattgttctgtgcacaatgtaaggt |
104 |
Q |
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|||| |||||||||||||||||| ||||||||| ||| | | |||||| | ||||||||||||||||||||||| | ||||| ||||||||| | || |
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| T |
8149132 |
ttaaggattgttcagctatgttggtgaatgatggaaatgaagttgtgagaattacggaatgtccacattgtcatagactattctgcgcacaatgtcaagt |
8149033 |
T |
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| Q |
105 |
ttcatggcacacaggtgttggttgtaaagagtttcaaa |
142 |
Q |
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| T |
8149032 |
tccatggcacacggaagtcgattgtagagagtttcaaa |
8148995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 28; Significance: 0.0000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 71 - 114
Target Start/End: Original strand, 24990999 - 24991042
Alignment:
| Q |
71 |
attgtcatagattgttctgtgcacaatgtaaggtttcatggcac |
114 |
Q |
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| T |
24990999 |
attgtcataggttattctgtgcacaatgtaaagttccatggcac |
24991042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 71 - 114
Target Start/End: Original strand, 25014536 - 25014579
Alignment:
| Q |
71 |
attgtcatagattgttctgtgcacaatgtaaggtttcatggcac |
114 |
Q |
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| T |
25014536 |
attgtcataggttattctgtgcacaatgtaaagttccatggcac |
25014579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 28; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 58 - 113
Target Start/End: Original strand, 19327038 - 19327093
Alignment:
| Q |
58 |
tcggaatgtccacattgtcatagattgttctgtgcacaatgtaaggtttcatggca |
113 |
Q |
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| T |
19327038 |
tcggagtgtccaaattgtaggagattgttctgtgcacaatgtaaggtctcgtggca |
19327093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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