View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4277-Insertion-29 (Length: 136)
Name: NF4277-Insertion-29
Description: NF4277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4277-Insertion-29 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0008 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 128; Significance: 1e-66; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 1e-66
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 6139174 - 6139039
Alignment:
| Q |
1 |
aaaactgctaggcatcccaagattattagttggaacactaaatcgatttacacggcctcctggcaataaccttgcatgttgttgaacatttatcatgttt |
100 |
Q |
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| T |
6139174 |
aaaactgctaggcatcccaagattaatagttggaacactaaatcgatttacacggcctcctggcaataaccttgcatgttgttgaacatttatcatattt |
6139075 |
T |
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| Q |
101 |
tcagcatatgcttcatccattcgttgttcatgaata |
136 |
Q |
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| T |
6139074 |
tcagcatatgcttcatccattcgttgttcatgaata |
6139039 |
T |
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Target: scaffold0008 (Bit Score: 32; Significance: 0.000000003; HSPs: 2)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 79
Target Start/End: Original strand, 8138 - 8185
Alignment:
| Q |
32 |
ggaacactaaatcgatttacacggcctcctggcaataaccttgcatgt |
79 |
Q |
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| T |
8138 |
ggaacactaaatcgattgacacagcctccttgcaataaccttacatgt |
8185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 79
Target Start/End: Original strand, 18737 - 18784
Alignment:
| Q |
32 |
ggaacactaaatcgatttacacggcctcctggcaataaccttgcatgt |
79 |
Q |
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| T |
18737 |
ggaacactaaatcgattgacacagcctccttgcaataaccttacatgt |
18784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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