View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4277-Insertion-31 (Length: 140)

Name: NF4277-Insertion-31
Description: NF4277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4277-Insertion-31
NF4277-Insertion-31
[»] chr2 (1 HSPs)
chr2 (2-140)||(43600996-43601132)


Alignment Details
Target: chr2 (Bit Score: 123; Significance: 1e-63; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 1e-63
Query Start/End: Original strand, 2 - 140
Target Start/End: Complemental strand, 43601132 - 43600996
Alignment:
Q  2 aaaggtaggcaaccccccaagaatctatttttccctaccaatccaagttgtagttgatagaaccaacttcttcctaccttgaaactcgtatgtgttgtaa 101  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43601132 aaaggtaggcaaccccc-aagaatctatttttccc-accaatccaagttgtagttgatagaaccaacttcttcctaccttgaaactcgtatgtgttgtaa 43601035  T
Q  102 ttgttctgaattagtatttctatctcatcgttaacttca 140  Q
    |||||||||||||||||||||||||||||||||||||||    
T  43601034 ttgttctgaattagtatttctatctcatcgttaacttca 43600996  T

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