View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4277-Insertion-33 (Length: 255)
Name: NF4277-Insertion-33
Description: NF4277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4277-Insertion-33 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 6 - 255
Target Start/End: Original strand, 42927019 - 42927268
Alignment:
| Q |
6 |
ccatcgcttcccctaaatcaacatcgacaatctgtgaaaaccactctgtctttgcaaggacaaatcacccctcttcatctcttatgcaaacaccaatgcc |
105 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
42927019 |
ccatcgcttcccctaaatcaacatcaacaatcggtgaaaaccattctgtctttgcaaagacaaatcgcccctcttcatctcttatgcaaacaccaatgcc |
42927118 |
T |
|
| Q |
106 |
aaccttgttaagagagttagaaaaagatgcatccacattgcatttataccgccgtgggctcggtttattccattgcacacacacagacgttgctgcagaa |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42927119 |
aaccttgttaagagagttagaaaaagatgcatccacattgcatttataccgccctgggctcggtttattccattgcacacacacagacgttgctgcagaa |
42927218 |
T |
|
| Q |
206 |
tttgcttggacatgccgaacaatctgcgcattcttccaactggtgagcaa |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42927219 |
tttgcttggacatgccgaacaatctgcgcattcttccaactggtgagcaa |
42927268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 9 - 252
Target Start/End: Original strand, 12225695 - 12225938
Alignment:
| Q |
9 |
tcgcttcccctaaatcaacatcgacaatctgtgaaaaccactctgtctttgcaaggacaaatcacccctcttcatctcttatgcaaacaccaatgccaac |
108 |
Q |
| |
|
|||||||||||||||||| || |||||| ||| |||||| |||||||||||||||||||| |||||||||||||| || ||||||| || || || |
|
|
| T |
12225695 |
tcgcttcccctaaatcaatgtcaacaatcggtgcaaaccattctgtctttgcaaggacaaaaagtccctcttcatctctaatacaaacacagattccgac |
12225794 |
T |
|
| Q |
109 |
cttgttaagagagttagaaaaagatgcatccacattgcatttataccgccgtgggctcggtttattccattgcacacacacagacgttgctgcagaattt |
208 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||||||| || | | |||| ||||| ||||||||||||||| ||| |||||| || |||| |
|
|
| T |
12225795 |
tttgttgagagagttggaaaaagatgcatccacattgcatttataacgtcctaggcttggtttcttccattgcacacacgcagtgattgctgaagtattt |
12225894 |
T |
|
| Q |
209 |
gcttggacatgccgaacaatctgcgcattcttccaactggtgag |
252 |
Q |
| |
|
| ||||||||| |||| || |||||| |||| ||| || ||||| |
|
|
| T |
12225895 |
ggttggacatgtcgaataacctgcgcgttctgccagcttgtgag |
12225938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 6 - 186
Target Start/End: Complemental strand, 10210904 - 10210724
Alignment:
| Q |
6 |
ccatcgcttcccctaaatcaacatcgacaatctgtgaaaaccactctgtctttgcaaggacaaatcacccctcttcatctcttatgcaaacaccaatgcc |
105 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||| |||||| |||||||||||||||||||| |||||||||||||| || |||||||| || || |
|
|
| T |
10210904 |
ccatcgcttcccctaaatcaacgtcgacaatcggtgcaaaccattctgtctttgcaaggacaaaaagtccctcttcatctctaatacaaacaccgattcc |
10210805 |
T |
|
| Q |
106 |
aaccttgttaagagagttagaaaaagatgcatccacattgcatttataccgccgtgggctcggtttattccattgcacaca |
186 |
Q |
| |
|
|| || || |||||||| ||||||||||||||||||||||||||||| || | | |||| |||| ||||||||||||| |
|
|
| T |
10210804 |
gactttattgagagagttggaaaaagatgcatccacattgcatttataacggcctaggcttggttacgtccattgcacaca |
10210724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University