View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4277_high_5 (Length: 437)
Name: NF4277_high_5
Description: NF4277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4277_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 8 - 420
Target Start/End: Complemental strand, 20210155 - 20209746
Alignment:
| Q |
8 |
atattattctttggtcctagtcattataaagctatagtatgtttaagaatatggacttatgtccctttatgaaattgtgtagttccctaattaataatct |
107 |
Q |
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| T |
20210155 |
atattattctttggtcttagtcattataaagctatagtatgtttaagaatatggacttatgtccctttatgaaattgtgcagttccctaattaataatct |
20210056 |
T |
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| Q |
108 |
catgagttttcttgtagcatctatctatttgtaactctagctctaattttgggtatttattttatataatgtatgtgctctattaacttgtaaatgattt |
207 |
Q |
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| T |
20210055 |
catgacttttcttgtagcatctatctatttgttactctagctctaattttgtgtatttattttatataatgtatgtgttctattaacttgtaaatgattt |
20209956 |
T |
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| Q |
208 |
ttgtgaggtcataaatcaaaatagtcaaagtgtatatatattttcgtgagtgcttagtccatttacaaggtggttactcttagaatagatccttcgaagt |
307 |
Q |
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| T |
20209955 |
ttgtgagctcataaatcaaaatagtcaaaatgtatatatattttcgtgagtgcttagtccattcacaaggtggttactcttaagatagatccttcgaagt |
20209856 |
T |
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| Q |
308 |
ccctcttcttttgtataaaatatacaatcaatatgtgtgctcttttcgacatggaactaccatattttttaattcacataacactagttctaattctcga |
407 |
Q |
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| T |
20209855 |
ccctcttcttttgtataa---atacaatcaatatgtgtgctcttttcgacatgggactaccatattttttaattcacataacactagttctaagtctcga |
20209759 |
T |
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| Q |
408 |
gacttggagttta |
420 |
Q |
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| T |
20209758 |
gacttggagttta |
20209746 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 359 - 400
Target Start/End: Complemental strand, 33424178 - 33424137
Alignment:
| Q |
359 |
tggaactaccatattttttaattcacataacactagttctaa |
400 |
Q |
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| T |
33424178 |
tggaactaccatattttttaattcacagaacactaattctaa |
33424137 |
T |
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