View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4277_high_7 (Length: 430)
Name: NF4277_high_7
Description: NF4277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4277_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 359; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 16 - 422
Target Start/End: Original strand, 42677984 - 42678390
Alignment:
| Q |
16 |
ctttctttaaatttggtaatgattttctgaaagcatattttatttatcctcccttctttactgtttctggtgttgatgttagagttagagaatgaatagt |
115 |
Q |
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| T |
42677984 |
ctttctttaaatttggtaatgattttctgaaagcatattttatttatcctcccttctttactgtttctggtgttgatgttagagttagagaatgaatagt |
42678083 |
T |
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| Q |
116 |
tgttagttaattaagttatgcttgtgcgttttaaattcaccacattaaccccctcttttacacatgctgctgctagttgtataatgtttaaatattgctg |
215 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
42678084 |
tgttagttaattaagttatgcttgtgcgttgtaaattcaccacattaaccccctcttttacacatgctgctgctagttgtttaatgtttaaatattgctg |
42678183 |
T |
|
| Q |
216 |
agagaannnnnnnnattgggtggttaacattctttctcatcgtttcttgctcagaatttcaacttgtacctgattcaagaccacaatgataatgatgaag |
315 |
Q |
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| T |
42678184 |
agagaattttttttattggtttgttaacattctttctcatcgtttcttgctcagaatttcaacttgtacctgattcaagaccacaatgataatgatgaag |
42678283 |
T |
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| Q |
316 |
gaagagcctagttcaaaaccaatcatgatccgtaaagtgtggggatacaatttgtcttgcgaattcaagctcattagtcagttaattggtaaatacaatt |
415 |
Q |
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| T |
42678284 |
gaagaccctggttcaaaaccaatcatgatccgtaaagtgtggggatacaatttgtcttgcgaattcaagctcattagtcagttaattggtaaatacaatt |
42678383 |
T |
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| Q |
416 |
tcatctc |
422 |
Q |
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||||||| |
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| T |
42678384 |
tcatctc |
42678390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 42677318 - 42677362
Alignment:
| Q |
34 |
atgattttctgaaagcatattttatttatcctcccttctttactg |
78 |
Q |
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||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
42677318 |
atgattttctgaaagtatattttatttatcttcccttctttactg |
42677362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 42677807 - 42677868
Alignment:
| Q |
16 |
ctttctttaaatttggtaatgattttctgaaagcatattttatttatcctcccttctttact |
77 |
Q |
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||||||||| |||| ||||||||||| ||||| |||||||||| |||||||||||||||| |
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| T |
42677807 |
ctttctttacgtttgataatgattttcagaaagtatattttattactcctcccttctttact |
42677868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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