View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4277_low_11 (Length: 311)
Name: NF4277_low_11
Description: NF4277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4277_low_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 45315131 - 45315423
Alignment:
| Q |
1 |
aggaacgtaattgggaatatttacagaaccctaaagtattcatcttgggattccgctcaacaacagcttcaaaatctccctttgaaatgggactcataca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45315131 |
aggaacgtaattgggaatatttacagaaccctaaagtattcatcttgggattccgctcaacaacagcttcaaaatctccctttgaaatgggactcataca |
45315230 |
T |
|
| Q |
101 |
ctgtcaatcaggttctcaaatcacaccctccaatggagaaagcgtggttgttcttcaactgggcttctcgtctcaaagggtttaagcacgaccaattcac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45315231 |
ctgtcaatcaggttctcaaatcacaccctccaatggagaaagcgtggttgttcttcaactgggcttctcgtctcaaagggtttaagcacgaccaattcac |
45315330 |
T |
|
| Q |
201 |
ttacacaaccatgctagatattttcggtgaagcagggagaatttcatcaatgaaacacgttttcaatcaaatgcatgagaaagggataaagat |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45315331 |
ttacacaaccatgctagatattttcggtgaagcagggagaatttcatcaatgaaacacgttttcaatcaaatgcatgagaaagggataaagat |
45315423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University