View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4277_low_12 (Length: 303)
Name: NF4277_low_12
Description: NF4277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4277_low_12 |
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| [»] scaffold0147 (1 HSPs) |
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Alignment Details
Target: scaffold0147 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 20 - 293
Target Start/End: Original strand, 20252 - 20525
Alignment:
| Q |
20 |
gagtttccaagtgcaagtacctctgtaacacaaacatttgtaacaacatgatcataatcaagtaatcaaaaggaaaccaaaaaataactttccagattaa |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20252 |
gagtttccaagtgcaagtacctctgtaacacaaacatttgtaacaacatgatcataatcaagtaatcaaaaggaaaccaaaaaataactttccagattaa |
20351 |
T |
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| Q |
120 |
gcaaagttccataccttgattaatacaaagatttttcctggaacctaaactcacaacacccatttcatcagcaaacactgtctttctcaactcctttaca |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||| |
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| T |
20352 |
gcaaagttccataccttgattaatacaaagatttttcctggaacctaaactcacaacacccatttcatcagcaaacaccgttttcctcaactcctttaca |
20451 |
T |
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| Q |
220 |
aactgtgaaagctgcgaatgtgtcctactacaaaaataaaccttcaatttcttctcctcttcctcttcttcatc |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20452 |
aactgtgaaagctgcgaatgtgtcctactacaaaaataaaccttcaatttcttctcctcttcctcttcttcatc |
20525 |
T |
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