View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4277_low_21 (Length: 214)
Name: NF4277_low_21
Description: NF4277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4277_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 14080679 - 14080885
Alignment:
| Q |
1 |
attattcagctcctaagaacaaaccctcgattaatagcttagaagaagctgatcctgagcttttgagatacttcgataagctcggtgtaccgttgaatga |
100 |
Q |
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| T |
14080679 |
attattcagctcctaagaacaaaccctcgattaatagcttagaagaagctgatcctgagcttttgagatacttcgataagctcggtgtaccgttgaatga |
14080778 |
T |
|
| Q |
101 |
acagaatcgattagcgaatgttgctgtagatgctgttttagacagtgtttctattgcaactactcataggaagacacttgagaaggctggtgttatattt |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14080779 |
acagaatcgattagctaatgttgctgtagatgctgttttagacagtgtttctattgcaactactcataggaagacacttgagaaggctggtgttatattt |
14080878 |
T |
|
| Q |
201 |
tcttcga |
207 |
Q |
| |
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| ||||| |
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| T |
14080879 |
tgttcga |
14080885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 14390707 - 14390913
Alignment:
| Q |
1 |
attattcagctcctaagaacaaaccctcgattaatagcttagaagaagctgatcctgagcttttgagatacttcgataagctcggtgtaccgttgaatga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14390707 |
attattcagctcctaagaacaaaccctcgattaatagcttagaagaagctgatcctgagcttttgagatacttcgataagctcggtgtaccgttgaatga |
14390806 |
T |
|
| Q |
101 |
acagaatcgattagcgaatgttgctgtagatgctgttttagacagtgtttctattgcaactactcataggaagacacttgagaaggctggtgttatattt |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14390807 |
acagaatcgattagctaatgttgctgtagatgctgttttagacagtgtttctattgcaactactcataggaagacacttgagaaggctggtgttatattt |
14390906 |
T |
|
| Q |
201 |
tcttcga |
207 |
Q |
| |
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| ||||| |
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| T |
14390907 |
tgttcga |
14390913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 6868090 - 6867890
Alignment:
| Q |
1 |
attattcagctcctaagaacaaaccctcgattaatagcttagaagaagctgatcctgagcttttgagatacttcgataagctcggtgtaccgttgaatga |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || || |
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| T |
6868090 |
attattcagctcctaagaacaaacccgagattaatagcttagaagaagctgatcctgagcttttgagatacttcgataagcttggtgtaccgttaaacga |
6867991 |
T |
|
| Q |
101 |
acagaatcgattagcgaatgttgctgtagatgctgttttagacagtgtttctattgcaactactcataggaagacacttgagaaggctggtgttatattt |
200 |
Q |
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||||||||| |||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
6867990 |
acagaatcgtctagcaaatgttgccgtggatgctgttttagacagtgtttctattgcaactactcataggaaaactcttgagaaggctggtgttatattt |
6867891 |
T |
|
| Q |
201 |
t |
201 |
Q |
| |
|
| |
|
|
| T |
6867890 |
t |
6867890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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