View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4278-Insertion-23 (Length: 173)
Name: NF4278-Insertion-23
Description: NF4278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4278-Insertion-23 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 150; Significance: 1e-79; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 1e-79
Query Start/End: Original strand, 6 - 173
Target Start/End: Complemental strand, 30267173 - 30267009
Alignment:
| Q |
6 |
aaaacaccatcattcaaattatactaagcaaccacacactacattatcttaaaaacacaatattttgctatgaagcacaaacccaaacacgaacaccaga |
105 |
Q |
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| T |
30267173 |
aaaacaccatcattcaaattatactaagcaaccacacacta---tatcttaaaaacactatattttgctatgaagcacaaacccaaacacgaacaccaga |
30267077 |
T |
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| Q |
106 |
cacgacattgacacttgagaaaatgaattattgaacataatcacgtgtcagacaccagacacatcttt |
173 |
Q |
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| T |
30267076 |
cacgacattgacacttgagaaaatgaattattgaacataatcacgtgtcagacaccagacacatcttt |
30267009 |
T |
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Target: chr2 (Bit Score: 28; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 73 - 112
Target Start/End: Original strand, 30563373 - 30563412
Alignment:
| Q |
73 |
ctatgaagcacaaacccaaacacgaacaccagacacgaca |
112 |
Q |
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| T |
30563373 |
ctatgaagcacatacacaaacacgaacactagacacgaca |
30563412 |
T |
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