View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4278-Insertion-8 (Length: 300)

Name: NF4278-Insertion-8
Description: NF4278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4278-Insertion-8
NF4278-Insertion-8
[»] chr3 (6 HSPs)
chr3 (5-300)||(28829130-28829423)
chr3 (203-248)||(46622249-46622294)
chr3 (178-248)||(8735724-8735793)
chr3 (178-248)||(9087965-9088034)
chr3 (203-247)||(35142745-35142789)
chr3 (196-248)||(49095657-49095709)
[»] chr2 (3 HSPs)
chr2 (5-141)||(10557600-10557734)
chr2 (196-248)||(9846976-9847028)
chr2 (204-248)||(17474236-17474280)
[»] chr5 (2 HSPs)
chr5 (190-248)||(38872276-38872333)
chr5 (203-248)||(38692239-38692284)
[»] chr4 (2 HSPs)
chr4 (196-247)||(25490830-25490881)
chr4 (178-247)||(42660144-42660212)
[»] chr8 (4 HSPs)
chr8 (178-247)||(36403619-36403687)
chr8 (196-248)||(42280346-42280398)
chr8 (203-248)||(34853985-34854030)
chr8 (196-248)||(27927397-27927449)
[»] chr7 (1 HSPs)
chr7 (203-248)||(3936652-3936697)
[»] chr1 (1 HSPs)
chr1 (178-226)||(24470667-24470714)
[»] chr6 (1 HSPs)
chr6 (203-248)||(2540122-2540167)
[»] scaffold0016 (1 HSPs)
scaffold0016 (203-247)||(205576-205620)


Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 5 - 300
Target Start/End: Complemental strand, 28829423 - 28829130
Alignment:
Q  5 aagattgtcctcatgcaaatcaaaaacatacacattttttccaaaccttatttgagaatatttttaagatgcattggtccatcccttctctagctatcac 104  Q
    ||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28829423 aagattgtcctcatgtaaatcaaaa-catacacattttt-ccaaaccttatttgagaatatttttaagatgcattggtccatcccttctctagctatcac 28829326  T
Q  105 ccttttaggaaaatagaccaagagccaaatgaaattagaccnnnnnnncaatggtgctaatgcaatttgaattcggactgcaaaggggcattttttcgaa 204  Q
    ||||||||||| |||||||||||| |||||||||||||| |         ||||||||||||||||||| |||||||||||||||||| ||||||  |||    
T  28829325 ccttttaggaagatagaccaagagacaaatgaaattagaacttttttttcatggtgctaatgcaatttggattcggactgcaaaggggtatttttg-gaa 28829227  T
Q  205 attttacagggcgcgcaagaaggccataagttgggaaaagtaa-tctcttaaatttttgtcgctggggcccacgctctgataaatagccgctagttc 300  Q
    |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28829226 attttacagggcgcgcaagaaggccataagatgggaaaagtaaatctcttaaatttttgtcgctggggcccacgctctgataaatagccgctagttc 28829130  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 248
Target Start/End: Complemental strand, 46622294 - 46622249
Alignment:
Q  203 aaattttacagggcgcgcaagaaggccataagttgggaaaagtaat 248  Q
    |||||||||||||||||  ||||||||||| |||||||||||||||    
T  46622294 aaattttacagggcgcgggagaaggccataggttgggaaaagtaat 46622249  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 248
Target Start/End: Original strand, 8735724 - 8735793
Alignment:
Q  178 cggactgcaaaggggcattttttcgaaattttacagggcgcgcaagaaggccataagttgggaaaagtaat 248  Q
    |||| |||||||||||||||||  ||||||||||||||||||| ||||| | | | | |||||||||||||    
T  8735724 cggattgcaaaggggcatttttg-gaaattttacagggcgcgcgagaagacaacagggtgggaaaagtaat 8735793  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 248
Target Start/End: Original strand, 9087965 - 9088034
Alignment:
Q  178 cggactgcaaaggggcattttttcgaaattttacagggcgcgcaagaaggccataagttgggaaaagtaat 248  Q
    |||| |||||||||||||||||  ||||||||||||||||||| ||||| | | | | |||||||||||||    
T  9087965 cggattgcaaaggggcatttttg-gaaattttacagggcgcgcgagaagacaacagggtgggaaaagtaat 9088034  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 247
Target Start/End: Original strand, 35142745 - 35142789
Alignment:
Q  203 aaattttacagggcgcgcaagaaggccataagttgggaaaagtaa 247  Q
    |||||||||||||||||  ||||||||||| | ||||||||||||    
T  35142745 aaattttacagggcgcgggagaaggccatagggtgggaaaagtaa 35142789  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 49095709 - 49095657
Alignment:
Q  196 tttttcgaaattttacagggcgcgcaagaaggccataagttgggaaaagtaat 248  Q
    ||||| |||||||||||||| |||  ||||||||||| | |||||||||||||    
T  49095709 tttttggaaattttacagggtgcgggagaaggccatagggtgggaaaagtaat 49095657  T

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Target: chr2 (Bit Score: 101; Significance: 4e-50; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 5 - 141
Target Start/End: Original strand, 10557600 - 10557734
Alignment:
Q  5 aagattgtcctcatgcaaatcaaaaacatacacattttttccaaaccttatttgagaatatttttaagatgcattggtccatcccttctctagctatcac 104  Q
    ||||||||||||||| |||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |    
T  10557600 aagattgtcctcatgtaaatcaaaat-atacacatttt-tccaaaccttatttgagaatatttttaagatgcattgatccatcccttctctagctatcgc 10557697  T
Q  105 ccttttaggaaaatagaccaagagccaaatgaaatta 141  Q
    ||||||||||| |||||||||||||||||||||||||    
T  10557698 ccttttaggaagatagaccaagagccaaatgaaatta 10557734  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 9847028 - 9846976
Alignment:
Q  196 tttttcgaaattttacagggcgcgcaagaaggccataagttgggaaaagtaat 248  Q
    ||||| ||||||||||||||||||| ||||||| ||| | |||||||||||||    
T  9847028 tttttggaaattttacagggcgcgcgagaaggcaatagggtgggaaaagtaat 9846976  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 248
Target Start/End: Complemental strand, 17474280 - 17474236
Alignment:
Q  204 aattttacagggcgcgcaagaaggccataagttgggaaaagtaat 248  Q
    ||||||||||||||||  ||||||||||| | |||||||||||||    
T  17474280 aattttacagggcgcgggagaaggccatagggtgggaaaagtaat 17474236  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 248
Target Start/End: Original strand, 38872276 - 38872333
Alignment:
Q  190 gggcattttttcgaaattttacagggcgcgcaagaaggccataagttgggaaaagtaat 248  Q
    ||||||||||| ||||||||||||||||||  ||||||||||||| |||||||||||||    
T  38872276 gggcatttttt-gaaattttacagggcgcgggagaaggccataaggtgggaaaagtaat 38872333  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 248
Target Start/End: Complemental strand, 38692284 - 38692239
Alignment:
Q  203 aaattttacagggcgcgcaagaaggccataagttgggaaaagtaat 248  Q
    |||||||||||||||||  ||||||||||| | |||||||||||||    
T  38692284 aaattttacagggcgcgggagaaggccatatggtgggaaaagtaat 38692239  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 247
Target Start/End: Complemental strand, 25490881 - 25490830
Alignment:
Q  196 tttttcgaaattttacagggcgcgcaagaaggccataagttgggaaaagtaa 247  Q
    ||||| |||||||||||||||||| |||||| ||||||| ||||||||||||    
T  25490881 tttttggaaattttacagggcgcgaaagaagaccataaggtgggaaaagtaa 25490830  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 247
Target Start/End: Complemental strand, 42660212 - 42660144
Alignment:
Q  178 cggactgcaaaggggcattttttcgaaattttacagggcgcgcaagaaggccataagttgggaaaagtaa 247  Q
    ||||||||||||||| ||||||   |||||||||||||||||| ||||||| ||| | ||||||||||||    
T  42660212 cggactgcaaaggggtatttttga-aaattttacagggcgcgcgagaaggcaatagggtgggaaaagtaa 42660144  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 247
Target Start/End: Complemental strand, 36403687 - 36403619
Alignment:
Q  178 cggactgcaaaggggcattttttcgaaattttacagggcgcgcaagaaggccataagttgggaaaagtaa 247  Q
    ||||||||||||||||||||||   |||||||||| ||||||| ||||||| ||| | ||||||||||||    
T  36403687 cggactgcaaaggggcatttttga-aaattttacaaggcgcgcgagaaggctatagggtgggaaaagtaa 36403619  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 42280398 - 42280346
Alignment:
Q  196 tttttcgaaattttacagggcgcgcaagaaggccataagttgggaaaagtaat 248  Q
    ||||| ||||||||||||||||||  ||||||||||| | |||||||||||||    
T  42280398 tttttggaaattttacagggcgcgggagaaggccataggatgggaaaagtaat 42280346  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 248
Target Start/End: Original strand, 34853985 - 34854030
Alignment:
Q  203 aaattttacagggcgcgcaagaaggccataagttgggaaaagtaat 248  Q
    |||||||||||||||||  ||||||||||| | |||||||||||||    
T  34853985 aaattttacagggcgcgggagaaggccatagggtgggaaaagtaat 34854030  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 27927449 - 27927397
Alignment:
Q  196 tttttcgaaattttacagggcgcgcaagaaggccataagttgggaaaagtaat 248  Q
    ||||| |||||||||||| |||||  ||||||||||| | |||||||||||||    
T  27927449 tttttggaaattttacagtgcgcgagagaaggccatagggtgggaaaagtaat 27927397  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 248
Target Start/End: Original strand, 3936652 - 3936697
Alignment:
Q  203 aaattttacagggcgcgcaagaaggccataagttgggaaaagtaat 248  Q
    ||||||||||||||||| |||||||||||| | |||||||||||||    
T  3936652 aaattttacagggcgcggaagaaggccatagggtgggaaaagtaat 3936697  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 226
Target Start/End: Complemental strand, 24470714 - 24470667
Alignment:
Q  178 cggactgcaaaggggcattttttcgaaattttacagggcgcgcaagaag 226  Q
    |||| |||||||||||||||||  |||||||||||||||||||||||||    
T  24470714 cggaatgcaaaggggcatttttg-gaaattttacagggcgcgcaagaag 24470667  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 248
Target Start/End: Original strand, 2540122 - 2540167
Alignment:
Q  203 aaattttacagggcgcgcaagaaggccataagttgggaaaagtaat 248  Q
    |||||||||||||||||  ||||||||||| | |||||||||||||    
T  2540122 aaattttacagggcgcgggagaaggccatagggtgggaaaagtaat 2540167  T

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Target: scaffold0016 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 247
Target Start/End: Complemental strand, 205620 - 205576
Alignment:
Q  203 aaattttacagggcgcgcaagaaggccataagttgggaaaagtaa 247  Q
    |||||||||||||||||| ||||||||||| |  |||||||||||    
T  205620 aaattttacagggcgcgcgagaaggccatagggcgggaaaagtaa 205576  T

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