View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4278-Insertion-9 (Length: 193)
Name: NF4278-Insertion-9
Description: NF4278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4278-Insertion-9 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 10 - 193
Target Start/End: Complemental strand, 39394401 - 39394218
Alignment:
| Q |
10 |
caattacttcatcaatcatgtcattggttttctctgctacctttttcatttctatgagctcattgatagctcgacctttttcttcttccattttactcat |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39394401 |
caattacttcatcaatcatgtcattggttttctcagctacctttttcatttctatgagctcattgatagctcgacctttttcttcttccattttactcat |
39394302 |
T |
|
| Q |
110 |
ctgctccttagtttgactcaacttgctatcgtattgctccatacgatgctgctgttgcatcatttgaacgttgagaatttatat |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39394301 |
ctgctccttagtttgactcaacttgctatcatattgctccatacgatgctgctgttgcatcatttgaacgttgagaatttatat |
39394218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University