View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4278_high_11 (Length: 301)

Name: NF4278_high_11
Description: NF4278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4278_high_11
NF4278_high_11
[»] chr3 (1 HSPs)
chr3 (6-301)||(32099210-32099505)


Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 6 - 301
Target Start/End: Complemental strand, 32099505 - 32099210
Alignment:
Q  6 taaccttctgtctcccttttctaacttcactaacatatatgtgttggaaaatatgagatcagtgagatccaaatatttcaattctataaatgtataaaaa 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32099505 taaccttctgtctcccttttctaacttcactaacatatatgtgttggaaaatatgagatcagtgagatccaaatatttcaattctataaatgtataaaaa 32099406  T
Q  106 caatctttgatctgcatgctaatttcttcctttgtaaaagcacaagcctctctttctttctctagttgtatcaaatcaagaatgacaaattttgttgaaa 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32099405 caatctttgatctgcatgctaatttcttcctttgtaaaagcacaatcctctctttctttctctagttgtatcaaatcaagaatgacaaattttgttgaaa 32099306  T
Q  206 cattctacaaagacagaaagtttcccttcattttcaccctctttgccttgcttatttgggtcacaatcatcctctttgccaacaccaccatcaact 301  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  32099305 cattctacaaagacagaaagtttccattcattttcaccctctttgccttgcttatttgtgtcacaatcatcctctttgccaacaccaccatcaact 32099210  T

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