View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4278_high_3 (Length: 449)

Name: NF4278_high_3
Description: NF4278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4278_high_3
NF4278_high_3
[»] chr2 (28 HSPs)
chr2 (12-76)||(36416790-36416854)
chr2 (60-184)||(3235395-3235520)
chr2 (113-184)||(11513886-11513957)
chr2 (113-184)||(22681196-22681267)
chr2 (113-174)||(15780065-15780126)
chr2 (60-163)||(10143104-10143210)
chr2 (113-197)||(39983330-39983413)
chr2 (119-182)||(44238047-44238110)
chr2 (112-198)||(10285847-10285932)
chr2 (117-198)||(43635099-43635179)
chr2 (105-148)||(14666527-14666571)
chr2 (67-148)||(17952748-17952832)
chr2 (105-184)||(33942129-33942209)
chr2 (105-184)||(35485896-35485976)
chr2 (85-150)||(5043605-5043672)
chr2 (114-177)||(6993742-6993805)
chr2 (113-156)||(7862741-7862784)
chr2 (105-148)||(9886292-9886335)
chr2 (122-184)||(16867736-16867798)
chr2 (60-163)||(28803538-28803644)
chr2 (67-135)||(29430695-29430765)
chr2 (72-162)||(656810-656903)
chr2 (113-178)||(30552661-30552726)
chr2 (56-93)||(41033055-41033092)
chr2 (60-179)||(44589967-44590088)
chr2 (124-184)||(9174814-9174874)
chr2 (92-148)||(16353828-16353884)
chr2 (116-148)||(34926955-34926987)
[»] chr3 (23 HSPs)
chr3 (71-198)||(24887282-24887410)
chr3 (60-184)||(27792804-27792931)
chr3 (60-184)||(38462213-38462340)
chr3 (109-179)||(43115040-43115110)
chr3 (105-161)||(43875627-43875684)
chr3 (113-181)||(14548735-14548803)
chr3 (105-184)||(23785234-23785314)
chr3 (67-198)||(40122751-40122883)
chr3 (118-172)||(42733960-42734014)
chr3 (113-184)||(22214670-22214741)
chr3 (113-148)||(42753594-42753629)
chr3 (113-184)||(45432950-45433021)
chr3 (114-184)||(237386-237456)
chr3 (60-136)||(2865718-2865796)
chr3 (118-184)||(9279337-9279403)
chr3 (72-147)||(24235731-24235809)
chr3 (118-184)||(24785198-24785264)
chr3 (67-145)||(33674707-33674784)
chr3 (113-147)||(41057026-41057060)
chr3 (113-173)||(19679782-19679842)
chr3 (116-184)||(21574482-21574549)
chr3 (105-137)||(43038765-43038797)
chr3 (117-173)||(51510215-51510271)
[»] chr7 (24 HSPs)
chr7 (60-169)||(27481320-27481432)
chr7 (113-184)||(38010702-38010773)
chr7 (60-148)||(5369738-5369827)
chr7 (107-198)||(44151478-44151569)
chr7 (113-184)||(40439042-40439113)
chr7 (105-183)||(39505936-39506014)
chr7 (60-142)||(33894555-33894639)
chr7 (118-177)||(2825249-2825308)
chr7 (61-145)||(9527140-9527227)
chr7 (117-184)||(15075096-15075163)
chr7 (113-168)||(24895344-24895399)
chr7 (113-172)||(30812136-30812195)
chr7 (120-179)||(46056026-46056085)
chr7 (117-184)||(48157131-48157198)
chr7 (120-198)||(33645959-33646035)
chr7 (72-146)||(5006558-5006635)
chr7 (153-198)||(12234887-12234931)
chr7 (115-184)||(20553093-20553162)
chr7 (67-169)||(36370610-36370713)
chr7 (113-161)||(25558225-25558273)
chr7 (113-161)||(25558423-25558471)
chr7 (108-144)||(28076540-28076576)
chr7 (67-140)||(45813235-45813311)
chr7 (113-161)||(46104646-46104694)
[»] chr4 (30 HSPs)
chr4 (60-183)||(21157700-21157826)
chr4 (105-198)||(30207569-30207662)
chr4 (105-206)||(42866047-42866148)
chr4 (97-184)||(51197493-51197580)
chr4 (119-184)||(11802528-11802593)
chr4 (113-162)||(18630668-18630717)
chr4 (113-184)||(29263358-29263429)
chr4 (113-184)||(49219127-49219198)
chr4 (72-184)||(54325048-54325163)
chr4 (113-198)||(50800028-50800111)
chr4 (60-145)||(24160545-24160633)
chr4 (113-148)||(8422886-8422921)
chr4 (67-139)||(29373943-29374018)
chr4 (113-172)||(36048521-36048580)
chr4 (72-160)||(46415827-46415918)
chr4 (113-176)||(52735110-52735173)
chr4 (114-180)||(11158372-11158438)
chr4 (118-184)||(17822876-17822942)
chr4 (113-147)||(24444026-24444060)
chr4 (114-184)||(35405936-35406006)
chr4 (113-150)||(2900328-2900365)
chr4 (117-194)||(14011226-14011302)
chr4 (113-198)||(27970046-27970130)
chr4 (128-184)||(4798577-4798633)
chr4 (118-198)||(6978960-6979039)
chr4 (114-198)||(11264290-11264373)
chr4 (73-148)||(24371000-24371079)
chr4 (78-179)||(24929443-24929547)
chr4 (113-184)||(26747413-26747485)
chr4 (78-172)||(29778746-29778842)
[»] chr6 (19 HSPs)
chr6 (113-198)||(2117391-2117475)
chr6 (67-170)||(33500506-33500612)
chr6 (72-198)||(281846-281974)
chr6 (91-172)||(1401074-1401156)
chr6 (113-179)||(28088238-28088304)
chr6 (74-150)||(1402942-1403021)
chr6 (60-148)||(4006646-4006737)
chr6 (60-114)||(4247717-4247772)
chr6 (130-185)||(7931799-7931854)
chr6 (60-184)||(20671877-20672003)
chr6 (105-198)||(3155155-3155247)
chr6 (117-179)||(34405103-34405165)
chr6 (113-150)||(5623144-5623181)
chr6 (62-136)||(10452419-10452496)
chr6 (113-170)||(24838768-24838825)
chr6 (223-271)||(1231208-1231256)
chr6 (113-177)||(1275137-1275201)
chr6 (113-145)||(7485118-7485150)
chr6 (120-184)||(28641760-28641824)
[»] chr5 (24 HSPs)
chr5 (67-194)||(18704038-18704166)
chr5 (97-172)||(41016150-41016226)
chr5 (67-179)||(12460017-12460131)
chr5 (113-184)||(37588371-37588442)
chr5 (113-199)||(37690633-37690719)
chr5 (60-177)||(31030148-31030266)
chr5 (113-199)||(37526196-37526281)
chr5 (113-177)||(2568646-2568710)
chr5 (71-184)||(14295449-14295565)
chr5 (78-184)||(28586777-28586886)
chr5 (113-169)||(29054896-29054952)
chr5 (60-161)||(39257421-39257524)
chr5 (117-160)||(25079597-25079639)
chr5 (117-160)||(25137566-25137608)
chr5 (105-183)||(36542294-36542373)
chr5 (117-183)||(26209425-26209491)
chr5 (116-198)||(32172644-32172725)
chr5 (122-184)||(33533550-33533612)
chr5 (113-198)||(10272429-10272513)
chr5 (60-93)||(14714944-14714977)
chr5 (60-139)||(32059645-32059726)
chr5 (60-184)||(12975279-12975405)
chr5 (97-184)||(26390801-26390888)
chr5 (113-177)||(42181110-42181174)
[»] chr8 (24 HSPs)
chr8 (115-198)||(11183535-11183617)
chr8 (72-145)||(11059745-11059814)
chr8 (112-184)||(31705072-31705144)
chr8 (73-163)||(13561344-13561437)
chr8 (113-195)||(39561542-39561623)
chr8 (80-171)||(10437837-10437930)
chr8 (113-198)||(11795080-11795164)
chr8 (60-178)||(29973013-29973134)
chr8 (60-184)||(4558730-4558857)
chr8 (120-180)||(7918788-7918848)
chr8 (71-184)||(31862436-31862552)
chr8 (113-180)||(7645966-7646033)
chr8 (113-148)||(9834836-9834871)
chr8 (118-184)||(8062322-8062388)
chr8 (113-147)||(35869825-35869859)
chr8 (60-93)||(8629041-8629074)
chr8 (120-181)||(21130609-21130670)
chr8 (113-198)||(26473750-26473834)
chr8 (105-177)||(30013197-30013270)
chr8 (113-150)||(31884582-31884619)
chr8 (74-149)||(37461089-37461166)
chr8 (114-183)||(39551221-39551290)
chr8 (72-139)||(40157461-40157526)
chr8 (127-163)||(14482203-14482239)
[»] chr1 (33 HSPs)
chr1 (113-184)||(12564885-12564956)
chr1 (113-184)||(23902078-23902149)
chr1 (60-179)||(17269182-17269304)
chr1 (71-179)||(25479524-25479635)
chr1 (62-207)||(43029391-43029537)
chr1 (79-198)||(4622044-4622165)
chr1 (118-179)||(35590908-35590969)
chr1 (115-184)||(39347978-39348047)
chr1 (67-150)||(17422983-17423070)
chr1 (113-161)||(25005831-25005879)
chr1 (105-184)||(30257662-30257742)
chr1 (116-184)||(45205059-45205127)
chr1 (61-139)||(5160342-5160420)
chr1 (113-148)||(25006081-25006116)
chr1 (116-179)||(27887134-27887197)
chr1 (113-183)||(7218086-7218156)
chr1 (105-150)||(8130415-8130461)
chr1 (60-127)||(23895268-23895338)
chr1 (113-150)||(4078194-4078231)
chr1 (117-198)||(4549222-4549302)
chr1 (56-134)||(15360822-15360903)
chr1 (71-169)||(15515484-15515585)
chr1 (113-198)||(27963368-27963452)
chr1 (79-146)||(29723441-29723510)
chr1 (78-184)||(39777613-39777722)
chr1 (117-150)||(42556676-42556709)
chr1 (60-139)||(6110223-6110302)
chr1 (60-197)||(6231815-6231953)
chr1 (113-198)||(28689450-28689536)
chr1 (75-179)||(30259502-30259610)
chr1 (119-179)||(33527422-33527482)
chr1 (113-185)||(33976674-33976746)
chr1 (72-129)||(45999354-45999414)
[»] scaffold0024 (1 HSPs)
scaffold0024 (60-148)||(27508-27599)
[»] scaffold0100 (1 HSPs)
scaffold0100 (110-147)||(42601-42638)


Alignment Details
Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 36416790 - 36416854
Alignment:
Q  12 acagaacacaatagacagaactaaaactattacgtctaagatcctaattaagtgattatttataa 76  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36416790 acagaacacaatagacagaactaaaactattacgtctaagatcctaattaagtgattatttataa 36416854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 60 - 184
Target Start/End: Complemental strand, 3235520 - 3235395
Alignment:
Q  60 taagtgattatttataagctatttctataacaaa-gataaataagttcaaactgtttcatataagctataagttgttttcacaagctatcatccagagct 158  Q
    |||||| |||| ||| |||||||| ||||||||| || ||||||  |||||||||||||||||| ||||||| |||||||| |  ||||| |  | || |    
T  3235520 taagtgcttatgtattagctatttttataacaaatgaaaaataaagtcaaactgtttcatataaactataagctgttttcatatactatcttgaaaagtt 3235421  T
Q  159 tatgggaataagctaaaaacagctta 184  Q
    ||||| |||||||| |||||||||||    
T  3235420 tatggaaataagctgaaaacagctta 3235395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 113 - 184
Target Start/End: Original strand, 11513886 - 11513957
Alignment:
Q  113 tttcatataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagctta 184  Q
    ||||||||||||||||||||||||||| ||||||||||  ||| ||| ||| |||||||| |||| ||||||    
T  11513886 tttcatataagctataagttgttttcataagctatcatggagaacttttggaaataagctgaaaatagctta 11513957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 113 - 184
Target Start/End: Complemental strand, 22681267 - 22681196
Alignment:
Q  113 tttcatataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagctta 184  Q
    |||||||||||||||||| |||||||| || ||||| |  ||| ||||||| ||||||||||||||||||||    
T  22681267 tttcatataagctataagctgttttcataatctatcctagagaacttatggaaataagctaaaaacagctta 22681196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 113 - 174
Target Start/End: Original strand, 15780065 - 15780126
Alignment:
Q  113 tttcatataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaa 174  Q
    |||||||||| |||||||||||||||| |||||||| | |||||||||| | ||||||||||    
T  15780065 tttcatataatctataagttgttttcataagctatcgtgcagagcttatagaaataagctaa 15780126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 60 - 163
Target Start/End: Original strand, 10143104 - 10143210
Alignment:
Q  60 taagtgattatttataagctatttctataacaaa-gataaa--taagttcaaactgtttc-atataagctataagttgttttcacaagctatcatccaga 155  Q
    |||||| |||| |||||| ||||||||||||||| ||||||  ||||| ||||||||||  |||||||||||||||| |||||| ||||||||||  |||    
T  10143104 taagtgcttatgtataagttatttctataacaaaagataaaattaagt-caaactgtttttatataagctataagtttttttcataagctatcatggaga 10143202  T
Q  156 gcttatgg 163  Q
    | ||||||    
T  10143203 gtttatgg 10143210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 113 - 197
Target Start/End: Original strand, 39983330 - 39983413
Alignment:
Q  113 tttcatataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagcttaatagacatgtcat 197  Q
    ||||||||||||||||||||||||||| |||||||| |  |||||| |||  ||||| || |||| ||||| |||||||||||||    
T  39983330 tttcatataagctataagttgttttcataagctatcctggagagctaatgaaaataaactgaaaatagctt-atagacatgtcat 39983413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 119 - 182
Target Start/End: Complemental strand, 44238110 - 44238047
Alignment:
Q  119 ataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagct 182  Q
    ||||||||||||||||||||| ||| ||||||  |||| |||||| |||||||||||| |||||    
T  44238110 ataagctataagttgttttcagaagttatcatggagagtttatggaaataagctaaaaccagct 44238047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 112 - 198
Target Start/End: Original strand, 10285847 - 10285932
Alignment:
Q  112 gtttcatataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagcttaatagacatgtcata 198  Q
    |||||||||||||||||||| |||| || |||||| |||  ||| ||||||| |||||| | |||||||||| || |||||||||||    
T  10285847 gtttcatataagctataagtcgtttgcataagctaacatagagaacttatggaaataagttgaaaacagctt-atggacatgtcata 10285932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 198
Target Start/End: Complemental strand, 43635179 - 43635099
Alignment:
Q  117 atataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagcttaatagacatgtcata 198  Q
    ||||| ||||||||||||| ||| ||||||||||  | ||||||||  |||||||| |||||||||| | ||||||||||||    
T  43635179 atatacgctataagttgttctcataagctatcatgaaaagcttatgaaaataagcttaaaacagctt-acagacatgtcata 43635099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 148
Target Start/End: Original strand, 14666527 - 14666571
Alignment:
Q  105 tcaaactg-tttcatataagctataagttgttttcacaagctatc 148  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||    
T  14666527 tcaaactgatttcatataagttataagttgttttcacaagctatc 14666571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 67 - 148
Target Start/End: Complemental strand, 17952832 - 17952748
Alignment:
Q  67 ttatttataagctatttctataacaaa-gataaa-taagttcaaactgttt-catataagctataagttgttttcacaagctatc 148  Q
    |||| |||||||||||||||||||||| |||||| |||  ||||||| ||| ||||||||||| ||| |||||||| ||||||||    
T  17952832 ttatatataagctatttctataacaaaagataaaataaagtcaaactattttcatataagctacaagatgttttcataagctatc 17952748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 184
Target Start/End: Original strand, 33942129 - 33942209
Alignment:
Q  105 tcaaactgttt-catataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagctta 184  Q
    ||||||||||| ||| |||||||||||||||||||| |||| |||||  |||||| |||  ||| |||| |||||||||||    
T  33942129 tcaaactgttttcatgtaagctataagttgttttcataagccatcatagagagctaatgaaaattagctgaaaacagctta 33942209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 184
Target Start/End: Original strand, 35485896 - 35485976
Alignment:
Q  105 tcaaactgtttcat-ataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagctta 184  Q
    ||||||| |||||| ||||||||||||||||||| | |||||||| |  ||||| ||||| ||| |||| |||||||||||    
T  35485896 tcaaactatttcattataagctataagttgtttttataagctatcctgaagagcctatggaaatgagctgaaaacagctta 35485976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 150
Target Start/End: Complemental strand, 5043672 - 5043605
Alignment:
Q  85 tataacaaagataaa-taagttcaaactgttt-catataagctataagttgttttcacaagctatcat 150  Q
    ||||| ||||||||| |||  ||||||||||| ||||||||||| |||||||||||| ||||||||||    
T  5043672 tataagaaagataaaataaagtcaaactgttttcatataagctagaagttgttttcataagctatcat 5043605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 177
Target Start/End: Complemental strand, 6993805 - 6993742
Alignment:
Q  114 ttcatataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaa 177  Q
    ||||||||||||||| |||||||||| |||||||  |  ||||||||||  |||||||||||||    
T  6993805 ttcatataagctataggttgttttcataagctatgcttgagagcttatgaaaataagctaaaaa 6993742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 156
Target Start/End: Original strand, 7862741 - 7862784
Alignment:
Q  113 tttcatataagctataagttgttttcacaagctatcatccagag 156  Q
    ||||||||||||||||||||| ||||| |||||||||| |||||    
T  7862741 tttcatataagctataagttggtttcataagctatcatacagag 7862784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 148
Target Start/End: Original strand, 9886292 - 9886335
Alignment:
Q  105 tcaaactgtttcatataagctataagttgttttcacaagctatc 148  Q
    ||||||| ||||||||||||||||||||||||||  ||||||||    
T  9886292 tcaaactatttcatataagctataagttgttttcctaagctatc 9886335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 16867736 - 16867798
Alignment:
Q  122 agctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagctta 184  Q
    ||||||||| ||||||||||||||||| |  ||||||||||| |||||| | |||||| ||||    
T  16867736 agctataaggtgttttcacaagctatcttggagagcttatggaaataagttgaaaacaactta 16867798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 163
Target Start/End: Complemental strand, 28803644 - 28803538
Alignment:
Q  60 taagtgattatttataagctatttctataacaaa-gataaa-taagttcaaactg-tttcatataagctataagttgttttcacaagctatcatccagag 156  Q
    |||||| |||| |||||| |||||| |||||||| |||||| |||  |||||||| |||||||||||||| |||||||||||  || ||||| |  ||||    
T  28803644 taagtgcttatatataagttatttcgataacaaaagataaaataaagtcaaactgatttcatataagctacaagttgttttcttaaactatcctggagag 28803545  T
Q  157 cttatgg 163  Q
    |||||||    
T  28803544 cttatgg 28803538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 135
Target Start/End: Original strand, 29430695 - 29430765
Alignment:
Q  67 ttatttataagctatttctataac-aaagataaataagttcaaactg-tttcatataagctataagttgtt 135  Q
    |||| ||||||||||||||||||| |||| |||||||  |||||||| |||| ||||||||||||| ||||    
T  29430695 ttatgtataagctatttctataacaaaagttaaataaagtcaaactgttttcttataagctataagctgtt 29430765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 162
Target Start/End: Complemental strand, 656903 - 656810
Alignment:
Q  72 tataagctatttctataacaaa-gataaa-taagttcaaactgttt-catataagctataagttgttttcacaagctatcatccagagcttatg 162  Q
    |||||||||||||||||||||| |||||| ||   ||||| ||||| | |||||||| ||||||| ||||| |||||||| | |||||||||||    
T  656903 tataagctatttctataacaaaagataaaatataatcaaattgttttcgtataagctgtaagttgatttcataagctatcttgcagagcttatg 656810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 178
Target Start/End: Complemental strand, 30552726 - 30552661
Alignment:
Q  113 tttcatataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaac 178  Q
    |||||||| |||||||| || |||||| || ||||| |  ||||||||||| ||||||||||||||    
T  30552726 tttcatatcagctataaattattttcataaactatcctagagagcttatggaaataagctaaaaac 30552661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 41033092 - 41033055
Alignment:
Q  56 taattaagtgattatttataagctatttctataacaaa 93  Q
    |||||||||| |||| ||||||||||||||||||||||    
T  41033092 taattaagtgcttatgtataagctatttctataacaaa 41033055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 179
Target Start/End: Original strand, 44589967 - 44590088
Alignment:
Q  60 taagtgattatttataagctatttctataacaaa-gataa-ataagttcaaactgtttcatataagctataagttgttttcacaagctatcatccagagc 157  Q
    |||||| |||| |||||| | |||||||| |||| ||||| ||||||||||  | || || ||||| ||||||||||||||| |||||||| |  ||| |    
T  44589967 taagtgcttatgtataagttgtttctatagcaaatgataagataagttcaattttttacagataagttataagttgttttcataagctatcttgaagaac 44590066  T
Q  158 ttatgggaataagctaaaaaca 179  Q
    || || ||||||||| ||||||    
T  44590067 ttgtgagaataagctgaaaaca 44590088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 184
Target Start/End: Original strand, 9174814 - 9174874
Alignment:
Q  124 ctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagctta 184  Q
    ||||||| |||||||| |||||||| | |||||||||||  |||||||| |||| ||||||    
T  9174814 ctataagctgttttcataagctatcttacagagcttatgaaaataagctgaaaatagctta 9174874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 148
Target Start/End: Original strand, 16353828 - 16353884
Alignment:
Q  92 aagataaataagttcaaactgtttcatataagctataagttgttttcacaagctatc 148  Q
    |||||||| ||  ||||||| |||||||||||||||||| |||||| | ||||||||    
T  16353828 aagataaacaaagtcaaactttttcatataagctataagctgtttttataagctatc 16353884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 148
Target Start/End: Original strand, 34926955 - 34926987
Alignment:
Q  116 catataagctataagttgttttcacaagctatc 148  Q
    |||||||||||||||||||||||| ||||||||    
T  34926955 catataagctataagttgttttcataagctatc 34926987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 71 - 198
Target Start/End: Complemental strand, 24887410 - 24887282
Alignment:
Q  71 ttataagctatttctataacaa-agataaa-taagttcaaactgt-ttcatataagctataagttgttttcacaagctatcatccagagcttatgggaat 167  Q
    |||||||||||||||||||||| ||||||| |||  ||||||||| ||||||||||||| ||| |||||||| |||||||| |  |||||||||||||||    
T  24887410 ttataagctatttctataacaatagataaaataaagtcaaactgtattcatataagctaaaagctgttttcataagctatcctggagagcttatgggaat 24887311  T
Q  168 aagctaaaaacagcttaatagacatgtcata 198  Q
    ||||| ||||||| ||||| |||||||||||    
T  24887310 aagctgaaaacag-ttaat-gacatgtcata 24887282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 60 - 184
Target Start/End: Original strand, 27792804 - 27792931
Alignment:
Q  60 taagtgattatttataagctatttctataacaaa-gataaa-taagttcaaactgttt-catataagctataagttgttttcacaagctatcatccagag 156  Q
    |||||| |||| ||||||||||||| | |||||| |||||| |||| ||||||| ||| ||||||||||  |||||||||||| || |||||||  ||||    
T  27792804 taagtgcttatgtataagctatttcaaaaacaaaagataaaataaggtcaaactattttcatataagctgcaagttgttttcataaactatcatgtagag 27792903  T
Q  157 cttatgggaataagctaaaaacagctta 184  Q
    ||||| | |||||||| |||||| ||||    
T  27792904 cttatagaaataagctgaaaacaactta 27792931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 60 - 184
Target Start/End: Original strand, 38462213 - 38462340
Alignment:
Q  60 taagtgattatttataagctatttctataac-aaagat-aaataagttcaaactg-tttcatataagctataagttgttttcacaagctatcatccagag 156  Q
    |||||| |||||||||||||||||||||| | |||||| ||||||  |||||||| ||||||||| |||||||  |||||||| ||||||||    | ||    
T  38462213 taagtgtttatttataagctatttctataccaaaagataaaataaagtcaaactgttttcatatatgctataaactgttttcataagctatccaagatag 38462312  T
Q  157 cttatgggaataagctaaaaacagctta 184  Q
    ||||||| |||||||| |||||| ||||    
T  38462313 cttatggaaataagctgaaaacaactta 38462340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 109 - 179
Target Start/End: Original strand, 43115040 - 43115110
Alignment:
Q  109 actgtttcatataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaaca 179  Q
    ||||||| |||||||||||||||||||||||  | |||||||  ||||||||||| |||||||| ||||||    
T  43115040 actgttttatataagctataagttgttttcatgaactatcattgagagcttatggaaataagctgaaaaca 43115110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 43875627 - 43875684
Alignment:
Q  105 tcaaactgtt-tcatataagctataagttgttttcacaagctatcatccagagcttat 161  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||  |||||||||    
T  43875627 tcaaactgttctcatataagctataagttgttttcataagctatcatggagagcttat 43875684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 113 - 181
Target Start/End: Complemental strand, 14548803 - 14548735
Alignment:
Q  113 tttcatataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagc 181  Q
    ||||||||||||||||||||||||||| ||| |||  |  ||||||||||| |||||||| ||||||||    
T  14548803 tttcatataagctataagttgttttcataagttattctggagagcttatggaaataagctgaaaacagc 14548735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 105 - 184
Target Start/End: Original strand, 23785234 - 23785314
Alignment:
Q  105 tcaaactgt-ttcatataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagctta 184  Q
    ||||||||| ||||||||||||||||  |||||||||||||| ||||  ||||||||||| || ||||| |||||| ||||    
T  23785234 tcaaactgtattcatataagctataaactgttttcacaagctctcatggagagcttatggaaacaagctgaaaacaactta 23785314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 198
Target Start/End: Complemental strand, 40122883 - 40122751
Alignment:
Q  67 ttatttataagctatttctataacaaa-gataaa-taagttcaaactgttt-catataagctataagttgttttcacaagctatcatccagagcttatgg 163  Q
    |||| ||||||||||||| |||||||| |||||| |||  ||||||||||| |||| ||||||||||||||||| | |||||||| |  | || | ||||    
T  40122883 ttatgtataagctatttcaataacaaaagataaaataaagtcaaactgttttcata-aagctataagttgtttttataagctatcctaaaaagttaatgg 40122785  T
Q  164 gaataagctaaaaacagcttaatagacatgtcata 198  Q
     ||||||||||||||| ||| ||||| ||||||||    
T  40122784 aaataagctaaaaacaactt-atagagatgtcata 40122751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 42734014 - 42733960
Alignment:
Q  118 tataagctataagttgttttcacaagctatcatccagagcttatgggaataagct 172  Q
    ||||||||||||||||||||||| ||||||| |  ||||||||||| ||||||||    
T  42734014 tataagctataagttgttttcaccagctatcgtggagagcttatggaaataagct 42733960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 184
Target Start/End: Complemental strand, 22214741 - 22214670
Alignment:
Q  113 tttcatataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagctta 184  Q
    |||||||||| |||||||||||||||| |||||||| |  |||  ||| || |||||||| |||||||||||    
T  22214741 tttcatataacctataagttgttttcataagctatcctagagacattacggaaataagctgaaaacagctta 22214670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 148
Target Start/End: Original strand, 42753594 - 42753629
Alignment:
Q  113 tttcatataagctataagttgttttcacaagctatc 148  Q
    ||||||||||||||||||||||||| ||||||||||    
T  42753594 tttcatataagctataagttgtttttacaagctatc 42753629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 184
Target Start/End: Complemental strand, 45433021 - 45432950
Alignment:
Q  113 tttcatataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagctta 184  Q
    |||||||| |||||||| |||||||||||||  ||| |  ||||||||||| |||||||| |||||| ||||    
T  45433021 tttcatatgagctataaattgttttcacaagtcatcctgtagagcttatggaaataagctgaaaacaactta 45432950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 184
Target Start/End: Original strand, 237386 - 237456
Alignment:
Q  114 ttcatataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagctta 184  Q
    ||||| |||| ||||||||||||||| ||| |||| |  |||||||| || |||||||| |||||||||||    
T  237386 ttcatgtaagttataagttgttttcataagttatcctatagagcttacggaaataagctgaaaacagctta 237456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 136
Target Start/End: Complemental strand, 2865796 - 2865718
Alignment:
Q  60 taagtgattatttataagctatttctataacaaagat-aaataagttcaaactg-tttcatataagctataagttgttt 136  Q
    |||| |||||| ||||||||||||||||||||||| | ||| ||  ||||| || |||||||||| |||||||||||||    
T  2865796 taagggattatatataagctatttctataacaaagttaaaacaaagtcaaattgttttcatataacctataagttgttt 2865718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 184
Target Start/End: Complemental strand, 9279403 - 9279337
Alignment:
Q  118 tataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagctta 184  Q
    ||||||||||| |||||||||| || |||||||  |||| ||| || |||||||| |||||||||||    
T  9279403 tataagctatatgttgttttcataaactatcatgaagagtttaaggaaataagctgaaaacagctta 9279337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 147
Target Start/End: Complemental strand, 24235809 - 24235731
Alignment:
Q  72 tataagctatttctataacaaa-gataa-ataagttcaaactgtttca-tataagctataagttgttttcacaagctat 147  Q
    |||||| ||||||||||||||| ||||| ||||  ||||||| ||| | |||||||||||||||||||||| |||||||    
T  24235809 tataagttatttctataacaaaagataatataaagtcaaactatttgaatataagctataagttgttttcataagctat 24235731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 184
Target Start/End: Original strand, 24785198 - 24785264
Alignment:
Q  118 tataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagctta 184  Q
    ||||| ||||||  |||||||| |||||||| || ||||||||||  ||||||||||||||| ||||    
T  24785198 tataatctataacgtgttttcataagctatcctcgagagcttatgtaaataagctaaaaacaactta 24785264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 145
Target Start/End: Complemental strand, 33674784 - 33674707
Alignment:
Q  67 ttatttataagctatttctataacaaagataaataagttcaaactgtttcatataagctataagttgttttcacaagct 145  Q
    ||||||||||||||||||||||||||| | ||| ||||| ||  | || ||||||| ||||||| |||||||| |||||    
T  33674784 ttatttataagctatttctataacaaaca-aaaaaagttaaattttttgcatataaactataagctgttttcataagct 33674707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 147
Target Start/End: Original strand, 41057026 - 41057060
Alignment:
Q  113 tttcatataagctataagttgttttcacaagctat 147  Q
    ||||||||||||||||||||||||||| |||||||    
T  41057026 tttcatataagctataagttgttttcataagctat 41057060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 173
Target Start/End: Complemental strand, 19679842 - 19679782
Alignment:
Q  113 tttcatataagctataagttgttttcacaagctatcatccagagcttatgggaataagcta 173  Q
    |||||||||||||||| |||||||||| || ||||||| | ||||| || | |||||||||    
T  19679842 tttcatataagctataggttgttttcataaactatcatgccgagctgatagaaataagcta 19679782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 184
Target Start/End: Original strand, 21574482 - 21574549
Alignment:
Q  116 catataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagctta 184  Q
    |||||||||||||| || |||| | |||||| |||  ||||||||||| |||||||||||| |||||||    
T  21574482 catataagctataacttttttt-ataagctaacatggagagcttatggaaataagctaaaagcagctta 21574549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 137
Target Start/End: Complemental strand, 43038797 - 43038765
Alignment:
Q  105 tcaaactgtttcatataagctataagttgtttt 137  Q
    ||||||| |||||||||||||||||||||||||    
T  43038797 tcaaactatttcatataagctataagttgtttt 43038765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 173
Target Start/End: Complemental strand, 51510271 - 51510215
Alignment:
Q  117 atataagctataagttgttttcacaagctatcatccagagcttatgggaataagcta 173  Q
    |||||| |||||||||||||||| ||| |||| |  ||||||||||| |||||||||    
T  51510271 atataaactataagttgttttcataagttatcgtggagagcttatggaaataagcta 51510215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 60 - 169
Target Start/End: Complemental strand, 27481432 - 27481320
Alignment:
Q  60 taagtgattatttataagctatttctataacaaag-ataaat--aagttcaaactgtttc-atataagctataagttgttttcacaagctatcatccaga 155  Q
    |||||| |||| ||||||||||||||||||||||| |||||   |||| ||||||||||| |||||||||||||||| |||||| ||||||||||  | |    
T  27481432 taagtgtttatgtataagctatttctataacaaaggataaaacgaagt-caaactgtttccatataagctataagttattttcataagctatcatggata 27481334  T
Q  156 gcttatgggaataa 169  Q
    |||||||| |||||    
T  27481333 gcttatggaaataa 27481320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 113 - 184
Target Start/End: Original strand, 38010702 - 38010773
Alignment:
Q  113 tttcatataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagctta 184  Q
    |||||||||||||||||| |||||||| || ||||| |  ||| ||||||| ||||||||||||||||||||    
T  38010702 tttcatataagctataagctgttttcataatctatcctagagaacttatggaaataagctaaaaacagctta 38010773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 60 - 148
Target Start/End: Complemental strand, 5369827 - 5369738
Alignment:
Q  60 taagtgattatttataagctatttctataacaaagataaataagttcaaactg-tttcatataagctataagttgttttcacaagctatc 148  Q
    |||||| |||| ||||||||| |||||||| ||| || |||||  |||||||| ||||||||| |||||||| |||||||| ||||||||    
T  5369827 taagtgcttatgtataagctaattctataaaaaaaattaataaagtcaaactgttttcatatatgctataagctgttttcataagctatc 5369738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 107 - 198
Target Start/End: Complemental strand, 44151569 - 44151478
Alignment:
Q  107 aaactgtttc-atataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagcttaatagacatgtcata 198  Q
    |||||||||| ||||||||||||||||||||||| || ||||| |  | ||||||||| |||||||| |||||| ||| || |||||||||||    
T  44151569 aaactgtttccatataagctataagttgttttcataaactatcttgaaaagcttatggaaataagctgaaaacatctt-atggacatgtcata 44151478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 113 - 184
Target Start/End: Original strand, 40439042 - 40439113
Alignment:
Q  113 tttcatataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagctta 184  Q
    ||||||||| | |||||||||||||||  ||||||| |  ||||||||||| |||||| |||||||||||||    
T  40439042 tttcatatatgttataagttgttttcattagctatcctgaagagcttatggaaataagttaaaaacagctta 40439113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 183
Target Start/End: Original strand, 39505936 - 39506014
Alignment:
Q  105 tcaaactgtttcatataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagctt 183  Q
    ||||||||||||||||||||  ||||||||||||| |||||||  |  |||| |||||| |||||||| |||| |||||    
T  39505936 tcaaactgtttcatataagcattaagttgttttcataagctattctggagagtttatggaaataagctgaaaatagctt 39506014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 60 - 142
Target Start/End: Original strand, 33894555 - 33894639
Alignment:
Q  60 taagtgattatttataagctatttctataac-aaagat-aaataagttcaaactg-tttcatataagctataagttgttttcacaa 142  Q
    |||||| |||| ||||||||||||||||||| |||||| ||||||| |||||||| ||||||||||||| || |||||||| ||||    
T  33894555 taagtgcttatgtataagctatttctataacaaaagataaaataag-tcaaactgttttcatataagctttatgttgtttttacaa 33894639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 177
Target Start/End: Complemental strand, 2825308 - 2825249
Alignment:
Q  118 tataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaa 177  Q
    ||||| ||||||||||||||||||||||||| |  ||| ||||||| |||||||| ||||    
T  2825308 tataaactataagttgttttcacaagctatcctagagaacttatggaaataagctgaaaa 2825249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 145
Target Start/End: Complemental strand, 9527227 - 9527140
Alignment:
Q  61 aagtgattatttataagctatttctataacaaa-gata-aataagttcaaactgttt-catataagctataagttgttttcacaagct 145  Q
    ||||| |||| |||| ||||| ||||||||||| |||| |||||  ||||||||||| ||||||| |||||||||||||||| |||||    
T  9527227 aagtgcttatatatacgctatatctataacaaaagatataataaagtcaaactgttttcatataaactataagttgttttcataagct 9527140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 184
Target Start/End: Complemental strand, 15075163 - 15075096
Alignment:
Q  117 atataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagctta 184  Q
    ||||||| |||||||| |||||| || ||| | |  ||||||||||| ||||||||||||||||||||    
T  15075163 atataagttataagttattttcataaactaccttagagagcttatggaaataagctaaaaacagctta 15075096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 168
Target Start/End: Original strand, 24895344 - 24895399
Alignment:
Q  113 tttcatataagctataagttgttttcacaagctatcatccagagcttatgggaata 168  Q
    ||||||||||||||||||||||||||||||| |||  |  ||||||||||| ||||    
T  24895344 tttcatataagctataagttgttttcacaagatattgtggagagcttatggaaata 24895399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 30812136 - 30812195
Alignment:
Q  113 tttcatataagctataagttgttttcacaagctatcatccagagcttatgggaataagct 172  Q
    |||| ||||||||||||| ||||||||  |||||||||  ||||||||||| ||||||||    
T  30812136 tttcgtataagctataagctgttttcattagctatcatggagagcttatggaaataagct 30812195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 179
Target Start/End: Complemental strand, 46056085 - 46056026
Alignment:
Q  120 taagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaaca 179  Q
    |||||||||| ||||||||| ||||||||    ||||||||||| |||||||||||||||    
T  46056085 taagctataaattgttttcataagctatcccgtagagcttatggaaataagctaaaaaca 46056026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 184
Target Start/End: Complemental strand, 48157198 - 48157131
Alignment:
Q  117 atataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagctta 184  Q
    ||||||||||||| |||||||||||||||||     ||| ||||||| |||||||| |||||||||||    
T  48157198 atataagctataatttgttttcacaagctattcgggagatcttatggaaataagctgaaaacagctta 48157131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 198
Target Start/End: Complemental strand, 33646035 - 33645959
Alignment:
Q  120 taagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagcttaatagacatgtcata 198  Q
    ||||||||||  |||||||| |||||||| |  ||||||||||| ||||| ||||||||| ||| ||||||||||||||    
T  33646035 taagctataaactgttttcataagctatc-tggagagcttatggaaataacctaaaaacaactt-atagacatgtcata 33645959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 146
Target Start/End: Complemental strand, 5006635 - 5006558
Alignment:
Q  72 tataagctatttctataacaaa-gataaa-taagttcaaactgttt-catataagctataagttgttttcacaagcta 146  Q
    ||||||||||| |||||||||| |||||| |||  ||||||||||| |||||||| ||||| ||||||||| ||||||    
T  5006635 tataagctattcctataacaaaagataaaataaagtcaaactgttttcatataaggtataaattgttttcataagcta 5006558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 198
Target Start/End: Complemental strand, 12234931 - 12234887
Alignment:
Q  153 agagcttatgggaataagctaaaaacagcttaatagacatgtcata 198  Q
    ||||||||||| |||||||| |||||||||| ||||||||||||||    
T  12234931 agagcttatggaaataagctgaaaacagctt-atagacatgtcata 12234887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 184
Target Start/End: Original strand, 20553093 - 20553162
Alignment:
Q  115 tcatataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagctta 184  Q
    ||||| ||||||||||||||||||||||| |||| |   |||||||||| ||||| || |||||| ||||    
T  20553093 tcatacaagctataagttgttttcacaagttatcctagtgagcttatggaaataatctgaaaacaactta 20553162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 169
Target Start/End: Original strand, 36370610 - 36370713
Alignment:
Q  67 ttatttataagctattt-ctataacaaagataaa-taagttcaaactgttt-catataagctataagttgttttcacaagctatcatccagagcttatgg 163  Q
    |||| |||||||||||| ||||||||| |||||| |||||| ||||||||| || |||||||||||||||||| || || ||||| |  |||||||||||    
T  36370610 ttatgtataagctattttctataacaa-gataaaataagtt-aaactgttttcacataagctataagttgtttccataaactatcctgaagagcttatgg 36370707  T
Q  164 gaataa 169  Q
     |||||    
T  36370708 aaataa 36370713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 161
Target Start/End: Complemental strand, 25558273 - 25558225
Alignment:
Q  113 tttcatataagctataagttgttttcacaagctatcatccagagcttat 161  Q
    ||||||||||||||||||||||||||| ||| |||| | || |||||||    
T  25558273 tttcatataagctataagttgttttcataagttatcctacaaagcttat 25558225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 161
Target Start/End: Complemental strand, 25558471 - 25558423
Alignment:
Q  113 tttcatataagctataagttgttttcacaagctatcatccagagcttat 161  Q
    ||||||||||||||||||||||||||| ||| |||| | || |||||||    
T  25558471 tttcatataagctataagttgttttcataagttatcctacaaagcttat 25558423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 28076540 - 28076576
Alignment:
Q  108 aactgtttcatataagctataagttgttttcacaagc 144  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  28076540 aactgtttcgtataagctataagttgttttcataagc 28076576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 140
Target Start/End: Complemental strand, 45813311 - 45813235
Alignment:
Q  67 ttatttataagctatttctataac-aaagat-aaataagttcaaactg-tttcatataagctataagttgttttcac 140  Q
    |||||||||||||||||||||| | |||||| ||||||  ||||  || |||||||||| |||||||||||||||||    
T  45813311 ttatttataagctatttctataccaaaagataaaataaagtcaacttgttttcatataatctataagttgttttcac 45813235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 161
Target Start/End: Complemental strand, 46104694 - 46104646
Alignment:
Q  113 tttcatataagctataagttgttttcacaagctatcatccagagcttat 161  Q
    ||||||||||||||||||||||||||| ||| |||| |  |||||||||    
T  46104694 tttcatataagctataagttgttttcaaaagatatcttgaagagcttat 46104646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 60 - 183
Target Start/End: Original strand, 21157700 - 21157826
Alignment:
Q  60 taagtgattatttataagctatttctataacaaag-ataaa-taagttcaaactgttt-catataagctataagttgttttcacaagctatcatccagag 156  Q
    |||||| |||| ||| ||||||||  ||||||||| ||||| |||  ||||||||||| ||| ||||||||||| |||||||| | |||||| |  ||||    
T  21157700 taagtgcttatgtatcagctattttgataacaaagtataaactaaagtcaaactgttttcatgtaagctataagatgttttcatatgctatcctgaagag 21157799  T
Q  157 cttatgggaataagctaaaaacagctt 183  Q
    ||||||| |||||||||||||||||||    
T  21157800 cttatggaaataagctaaaaacagctt 21157826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 105 - 198
Target Start/End: Complemental strand, 30207662 - 30207569
Alignment:
Q  105 tcaaactgttt-catataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagcttaatagacatgtcata 198  Q
    ||||||||||| |||||||||||||||||||||||| |||||| | |  |||| |||||| |||||||| |||||||||| | ||||||||||||    
T  30207662 tcaaactgttttcatataagctataagttgttttcataagctaccttagagagattatggaaataagctgaaaacagctt-acagacatgtcata 30207569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 105 - 206
Target Start/End: Original strand, 42866047 - 42866148
Alignment:
Q  105 tcaaactgtttc-atataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagcttaatagacatgtcatagaatg 203  Q
    |||||||||||  ||||||||||||||||||||||| |||||||| |  ||||||||||| | |||||||||| || ||| || ||||| ||||||||||    
T  42866047 tcaaactgtttttatataagctataagttgttttcataagctatccttgagagcttatggaagtaagctaaaagcatctt-atggacatatcatagaatg 42866145  T
Q  204 ttt 206  Q
    |||    
T  42866146 ttt 42866148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 97 - 184
Target Start/End: Complemental strand, 51197580 - 51197493
Alignment:
Q  97 aaataagttcaaactgt-ttcatataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagctta 184  Q
    |||||| |||||||| | |||||||||||||||  ||||||||| ||  ||||||| ||||||||||| ||||||||||||||||||||    
T  51197580 aaataaattcaaactatattcatataagctatacattgttttcataatttatcatc-agagcttatggaaataagctaaaaacagctta 51197493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 119 - 184
Target Start/End: Original strand, 11802528 - 11802593
Alignment:
Q  119 ataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagctta 184  Q
    |||||||| |||||||||||| ||||||| ||  |||||||||| ||||||||| |||||||||||    
T  11802528 ataagctacaagttgttttcataagctattatggagagcttatgagaataagctgaaaacagctta 11802593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 113 - 162
Target Start/End: Original strand, 18630668 - 18630717
Alignment:
Q  113 tttcatataagctataagttgttttcacaagctatcatccagagcttatg 162  Q
    ||||||||||||||||||||||||||||||||||||   |||||||||||    
T  18630668 tttcatataagctataagttgttttcacaagctatccaacagagcttatg 18630717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 113 - 184
Target Start/End: Original strand, 29263358 - 29263429
Alignment:
Q  113 tttcatataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagctta 184  Q
    ||||| |||||| |||||||||||||| |||||||| | |||||||| ||| |||||||| |||||| ||||    
T  29263358 tttcaaataagcgataagttgttttcataagctatcctgcagagcttgtggaaataagctgaaaacaactta 29263429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 113 - 184
Target Start/End: Original strand, 49219127 - 49219198
Alignment:
Q  113 tttcatataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagctta 184  Q
    ||||||||||||||||||||||||||| || ||||| |  |||| |||||| |||||||| |||||| ||||    
T  49219127 tttcatataagctataagttgttttcataaactatcttaaagagattatggaaataagctgaaaacaactta 49219198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 72 - 184
Target Start/End: Complemental strand, 54325163 - 54325048
Alignment:
Q  72 tataagctatttctataacaaa-gataaa-taagttcaaactgttt-catataagctataagttgttttcacaagctatcatccagagcttatgggaata 168  Q
    ||||| |||||||||| ||||| |||||| |||  ||||||||||| ||||||||||||||| | |||||| ||||||||||  |||| ||||||  |||    
T  54325163 tataaactatttctattacaaaagataaaataaagtcaaactgttttcatataagctataagctattttcaaaagctatcatggagagtttatggagata 54325064  T
Q  169 agctaaaaacagctta 184  Q
    | || |||||||||||    
T  54325063 aactgaaaacagctta 54325048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 113 - 198
Target Start/End: Complemental strand, 50800111 - 50800028
Alignment:
Q  113 tttcatataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagcttaatagacatgtcata 198  Q
    |||| ||||||||||||| |||||||  ||||||||||  ||| ||| ||| |||||||| |||||||||| ||||||||||||||    
T  50800111 tttcttataagctataagctgttttcttaagctatcatggagaactt-tggaaataagctgaaaacagctt-atagacatgtcata 50800028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 145
Target Start/End: Complemental strand, 24160633 - 24160545
Alignment:
Q  60 taagtgattatttataagctatttctataacaaa-gataa-ataagttcaaactgttt-catataagctataagttgttttcacaagct 145  Q
    |||||| ||||  ||||||| ||||||||||||| ||||| |||| |||||||| ||| ||| |||||||||||||||||||| |||||    
T  24160633 taagtgcttataaataagctttttctataacaaaagataatataaattcaaactattttcatgtaagctataagttgttttcataagct 24160545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 148
Target Start/End: Complemental strand, 8422921 - 8422886
Alignment:
Q  113 tttcatataagctataagttgttttcacaagctatc 148  Q
    |||||||||||||||||||||||||||||| |||||    
T  8422921 tttcatataagctataagttgttttcacaatctatc 8422886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 139
Target Start/End: Complemental strand, 29374018 - 29373943
Alignment:
Q  67 ttatttataagctatttctataaca-aagataaa-taagttcaaactgt-ttcatataagctataagttgttttca 139  Q
    |||| |||||||||||||||||||| |||||||| |||  ||||| ||| |||||||||||||||| |||||||||    
T  29374018 ttatatataagctatttctataacagaagataaaataatgtcaaaatgtattcatataagctataatttgttttca 29373943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 36048521 - 36048580
Alignment:
Q  113 tttcatataagctataagttgttttcacaagctatcatccagagcttatgggaataagct 172  Q
    |||||||||||||||||| | |||||| |||||||| |  ||||||||||| ||||||||    
T  36048521 tttcatataagctataagctattttcaaaagctatcttagagagcttatggaaataagct 36048580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 160
Target Start/End: Complemental strand, 46415918 - 46415827
Alignment:
Q  72 tataagctatttctataac-aaagat-aaataagttcaaactg-tttcatataagctataagttgttttcacaagctatcatccagagctta 160  Q
    ||||||||||||| ||||| |||||| ||||| | |||||||| ||||||| ||| |||||||| |||||| |||||||| || ||||||||    
T  46415918 tataagctatttcaataacaaaagataaaataggatcaaactgttttcatacaagttataagttcttttcataagctatcctcgagagctta 46415827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 176
Target Start/End: Original strand, 52735110 - 52735173
Alignment:
Q  113 tttcatataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaa 176  Q
    ||||||||||| |||| |||||||||  |||||||| |  ||||||||||| ||||||||||||    
T  52735110 tttcatataagttatatgttgttttcgtaagctatcttgaagagcttatggaaataagctaaaa 52735173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 180
Target Start/End: Complemental strand, 11158438 - 11158372
Alignment:
Q  114 ttcatataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacag 180  Q
    |||||| ||| ||||||||||||||| |||||||| |  ||||||| ||| |||||||| |||||||    
T  11158438 ttcatacaagttataagttgttttcataagctatcttagagagcttgtggaaataagctgaaaacag 11158372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 184
Target Start/End: Complemental strand, 17822942 - 17822876
Alignment:
Q  118 tataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagctta 184  Q
    |||| ||||||||||||||||| |||||||| |  ||| ||||||  ||||||||||||| ||||||    
T  17822942 tatatgctataagttgttttcataagctatcttggagaacttatgaaaataagctaaaaaaagctta 17822876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 147
Target Start/End: Original strand, 24444026 - 24444060
Alignment:
Q  113 tttcatataagctataagttgttttcacaagctat 147  Q
    ||||||||||||||||||||||||||| |||||||    
T  24444026 tttcatataagctataagttgttttcataagctat 24444060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 184
Target Start/End: Original strand, 35405936 - 35406006
Alignment:
Q  114 ttcatataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagctta 184  Q
    ||||||||| ||||| |||||||||| ||| |||| |  ||||||||||| | |||||| |||||||||||    
T  35405936 ttcatataaactataggttgttttcaaaagttatcctggagagcttatggaagtaagctgaaaacagctta 35406006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 2900328 - 2900365
Alignment:
Q  113 tttcatataagctataagttgttttcacaagctatcat 150  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  2900328 tttcatataaactataagctgttttcacaagctatcat 2900365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 194
Target Start/End: Original strand, 14011226 - 14011302
Alignment:
Q  117 atataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagcttaatagacatgt 194  Q
    |||||||||| ||  ||||| || |||||||| |  ||||||||||| |||||||| |||||||||||| ||||||||    
T  14011226 atataagctacaaaatgtttacataagctatcttggagagcttatggaaataagctgaaaacagcttaa-agacatgt 14011302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 198
Target Start/End: Original strand, 27970046 - 27970130
Alignment:
Q  113 tttcatataagctataagttgttttcacaagctatcatccagagcttatgggaataag--ctaaaaacagcttaatagacatgtcata 198  Q
    ||||||||||| ||||| ||||||||| ||||| ||||  |||||||||||  |||||  || |||||||||| ||||||||||||||    
T  27970046 tttcatataagttataacttgttttcataagctgtcatggagagcttatgg--ataagtactgaaaacagctt-atagacatgtcata 27970130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 4798633 - 4798577
Alignment:
Q  128 aagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagctta 184  Q
    |||||||||||| |||||||| |  ||||||||||  |||||||| |||||||||||    
T  4798633 aagttgttttcataagctatcttggagagcttatgcaaataagctcaaaacagctta 4798577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 198
Target Start/End: Complemental strand, 6979039 - 6978960
Alignment:
Q  118 tataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagcttaatagacatgtcata 198  Q
    |||| ||||||||||||||| | |||| ||| |  |||| |||||  |||||||| |||||||||| ||||||||||||||    
T  6979039 tatatgctataagttgtttttataagccatcctaaagagtttatgaaaataagctgaaaacagctt-atagacatgtcata 6978960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 198
Target Start/End: Original strand, 11264290 - 11264373
Alignment:
Q  114 ttcatataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagcttaatagacatgtcata 198  Q
    |||||||| | ||||||||||||||| |||| ||| |  ||||||||||| |||||| | ||||||| || || |||||||||||    
T  11264290 ttcatatatgttataagttgttttcataagccatcctagagagcttatggaaataagttgaaaacag-tttatggacatgtcata 11264373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 148
Target Start/End: Complemental strand, 24371079 - 24371000
Alignment:
Q  73 ataagctatttctataac--aaagataaa-taagttcaaactg-tttcatataagctataagttgttttcacaagctatc 148  Q
    ||||||||||||||||||  ||||||||| ||| |||||| || ||| | | ||||||||||||||||||| ||||||||    
T  24371079 ataagctatttctataaccaaaagataaaataaattcaaattgcttttacaaaagctataagttgttttcataagctatc 24371000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 179
Target Start/End: Original strand, 24929443 - 24929547
Alignment:
Q  78 ctatttctataacaaa-gataaa-taagttcaaactgttt-catataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaa 174  Q
    |||||||||||||||| |||||| |||  || |||||||| |||| ||||||||||||||||||| || || |  |  ||||||||||| |||||||| |    
T  24929443 ctatttctataacaaaagataaaataaagtctaactgttttcataaaagctataagttgttttcataaactctactagagagcttatggaaataagctga 24929542  T
Q  175 aaaca 179  Q
    |||||    
T  24929543 aaaca 24929547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 184
Target Start/End: Complemental strand, 26747485 - 26747413
Alignment:
Q  113 tttcatataagct-ataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagctta 184  Q
    ||||||||||||| ||||||||||||||  || |||| |  ||| ||||||| ||||||||||||| ||||||    
T  26747485 tttcatataagcttataagttgttttcattagttatcctaaagaacttatggaaataagctaaaaaaagctta 26747413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 172
Target Start/End: Original strand, 29778746 - 29778842
Alignment:
Q  78 ctatttctataacaaagataaat-aagttcaaactgttt-catataagctataagttgttttcacaagctatcatccagagcttatgggaataagct 172  Q
    |||||||| ||||||| |||||| ||| | ||| ||||| |||||||||| ||||||||||||| |||||| | |  ||||||||||  ||||||||    
T  29778746 ctatttctttaacaaaaataaattaaggtgaaattgttttcatataagctgtaagttgttttcataagctaccttgaagagcttatgaaaataagct 29778842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 113 - 198
Target Start/End: Original strand, 2117391 - 2117475
Alignment:
Q  113 tttcatataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagcttaatagacatgtcata 198  Q
    |||||||||| |||||||||||||||| ||| |||| |  ||||||||| | ||||||||||||||||||| ||||||||| ||||    
T  2117391 tttcatataatctataagttgttttcataagttatcctagagagcttattgaaataagctaaaaacagctt-atagacatgccata 2117475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 67 - 170
Target Start/End: Complemental strand, 33500612 - 33500506
Alignment:
Q  67 ttatttataagctatttctataac-aaagataaa-taagttcaaactgtttc-atataagctataagttgttttcacaagctatcatccagagcttatgg 163  Q
    |||| ||||||||||||||||||| ||||||||| |||  |||||||||||| ||||||| |||||| ||||| | |||||||||||  ||| |||||||    
T  33500612 ttatgtataagctatttctataacaaaagataaagtaaaatcaaactgtttcaatataagttataagctgtttccgcaagctatcatgtagaacttatgg 33500513  T
Q  164 gaataag 170  Q
     ||||||    
T  33500512 aaataag 33500506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 72 - 198
Target Start/End: Complemental strand, 281974 - 281846
Alignment:
Q  72 tataagctatttctataac-aaagat-aaataagttcaaactg-tttcatataagctataagttgttttcacaagctatcatccagagcttatgggaata 168  Q
    ||||||||||| ||||||| |||||| ||||||  ||||  || |||||||||||||||||| ||| |||| |||||||| |  |||||| |||| ||||    
T  281974 tataagctattcctataacaaaagataaaataaagtcaacttgttttcatataagctataagctgtgttcataagctatcctagagagctcatggaaata 281875  T
Q  169 agctaaaaacagcttaatagacatgtcata 198  Q
    |||| |||||| ||| ||||||||||||||    
T  281874 agctgaaaacaactt-atagacatgtcata 281846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 172
Target Start/End: Original strand, 1401074 - 1401156
Alignment:
Q  91 aaagataaataagttcaaactgtttca-tataagctataagttgttttcacaagctatcatccagagcttatgggaataagct 172  Q
    ||||||||||||  |||||||| || | ||||||||||||| |||||||| ||||||||||  |||||||||||  |||||||    
T  1401074 aaagataaataaaatcaaactgctttagtataagctataagctgttttcataagctatcatggagagcttatggagataagct 1401156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 113 - 179
Target Start/End: Complemental strand, 28088304 - 28088238
Alignment:
Q  113 tttcatataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaaca 179  Q
    |||||||||||||||||  |||||||| ||||||||||  |||||| |||| |||||||| ||||||    
T  28088304 tttcatataagctataaactgttttcataagctatcatggagagctcatggaaataagctcaaaaca 28088238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 150
Target Start/End: Original strand, 1402942 - 1403021
Alignment:
Q  74 taagctatttctataacaaa-gataaa-taagttcaaactgttt-catataagctataagttgttttcacaagctatcat 150  Q
    |||||||||||||||||||| |||||| |||  | ||||| ||| |||||||||||||| ||||||||| ||||||||||    
T  1402942 taagctatttctataacaaaagataaaataaagttaaactattttcatataagctataaattgttttcataagctatcat 1403021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 148
Target Start/End: Original strand, 4006646 - 4006737
Alignment:
Q  60 taagtgattatttataagctatttctataacaaa-gataaa-taagttcaaactgtttc-atataagctataagttgttttcacaagctatc 148  Q
    |||||| ||||  ||||| ||||||||||||||| |||||| |||  ||||| |||||  ||||||||||||||||||||||| ||||||||    
T  4006646 taagtgcttatgcataagatatttctataacaaatgataaaataaagtcaaattgtttttatataagctataagttgttttcataagctatc 4006737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 114
Target Start/End: Complemental strand, 4247772 - 4247717
Alignment:
Q  60 taagtgattatttataagctatttctataac-aaagataaataagttcaaactgtt 114  Q
    |||||| |||| ||||||||||||||||||| ||||||||| || |||||||||||    
T  4247772 taagtgcttatgtataagctatttctataacaaaagataaaaaaattcaaactgtt 4247717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 185
Target Start/End: Complemental strand, 7931854 - 7931799
Alignment:
Q  130 gttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagcttaa 185  Q
    ||||||||||||||||||| |  ||||||||||| |||||||| |||||| |||||    
T  7931854 gttgttttcacaagctatcctatagagcttatggaaataagctgaaaacaacttaa 7931799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 184
Target Start/End: Complemental strand, 20672003 - 20671877
Alignment:
Q  60 taagtgattatttataagctatttctataac-aaagat-aaataagttcaaactg-tttcatataagctataagttgttttcacaagctatcatccagag 156  Q
    ||||||||||| ||||||||||||||| | | |||||| ||||||  ||||| || |||| |||||||| ||| ||||||||| || |||||||  ||||    
T  20672003 taagtgattatgtataagctatttctagatcaaaagataaaataaagtcaaattgttttcgtataagctttaaattgttttcataaactatcatagagag 20671904  T
Q  157 cttatgggaataagctaaaaacagctta 184  Q
    ||| ||| | |||||| |||||||||||    
T  20671903 ctt-tggaagtaagctgaaaacagctta 20671877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 198
Target Start/End: Original strand, 3155155 - 3155247
Alignment:
Q  105 tcaaactgtttc-atataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagcttaatagacatgtcata 198  Q
    |||||||||||| |||||| ||||||| | |||||| ||| |||| |  |||||| |||| |||||||| |||||||||| ||||||||||||||    
T  3155155 tcaaactgtttccatataacctataagctattttcataagatatcctggagagct-atggaaataagctgaaaacagctt-atagacatgtcata 3155247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 179
Target Start/End: Original strand, 34405103 - 34405165
Alignment:
Q  117 atataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaaca 179  Q
    |||||| ||||||||||||||||||||||||| |  | ||  |||||||||||||| ||||||    
T  34405103 atataacctataagttgttttcacaagctatcctgaaaagtgtatgggaataagctgaaaaca 34405165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 5623144 - 5623181
Alignment:
Q  113 tttcatataagctataagttgttttcacaagctatcat 150  Q
    |||||||||| |||||||||||||||| ||||||||||    
T  5623144 tttcatataaactataagttgttttcataagctatcat 5623181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 136
Target Start/End: Complemental strand, 10452496 - 10452419
Alignment:
Q  62 agtgattatttataagctatttctataacaaag-ataaa-taagttcaaactgttt-catataagctataagttgttt 136  Q
    |||| |||| ||||||||||||||||||||||  ||||| |||  ||||||| ||| |||||||||||||||||||||    
T  10452496 agtgcttatgtataagctatttctataacaaaatataaaataaaatcaaactattttcatataagctataagttgttt 10452419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 170
Target Start/End: Complemental strand, 24838825 - 24838768
Alignment:
Q  113 tttcatataagctataagttgttttcacaagctatcatccagagcttatgggaataag 170  Q
    |||||||||||||||||| || ||||| ||||||||||  ||||||||| | ||||||    
T  24838825 tttcatataagctataagctgatttcataagctatcatggagagcttatagaaataag 24838768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 271
Target Start/End: Complemental strand, 1231256 - 1231208
Alignment:
Q  223 ttatttcaatagataaactcgaataagtcaattcaaacatgccctaaat 271  Q
    |||| ||||||||||||||| ||||| ||||| ||||||||| ||||||    
T  1231256 ttatgtcaatagataaactcaaataaatcaatccaaacatgctctaaat 1231208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 177
Target Start/End: Original strand, 1275137 - 1275201
Alignment:
Q  113 tttcatataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaa 177  Q
    |||||||||||||||||| |||||||| | | |||| |  ||||||||||| |||||||| ||||    
T  1275137 tttcatataagctataagctgttttcatatgttatcctggagagcttatggaaataagctgaaaa 1275201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 145
Target Start/End: Complemental strand, 7485150 - 7485118
Alignment:
Q  113 tttcatataagctataagttgttttcacaagct 145  Q
    ||||||||||||||||||||||||||| |||||    
T  7485150 tttcatataagctataagttgttttcataagct 7485118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 184
Target Start/End: Complemental strand, 28641824 - 28641760
Alignment:
Q  120 taagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagctta 184  Q
    ||||||||||  ||||||||  ||||||  | |||||||||||  ||||||||||||||||||||    
T  28641824 taagctataaactgttttcaatagctattctgcagagcttatgaaaataagctaaaaacagctta 28641760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 67 - 194
Target Start/End: Complemental strand, 18704166 - 18704038
Alignment:
Q  67 ttatttataagctatttctataacaaa-gataaataagttcaaactgtttc-atataagctataagttgttttcacaagctatcatccagagcttatggg 164  Q
    |||| |||||| ||||||||||||||| |||||||||  |||| || |||  ||||||||||||||||||||||| ||||||| |   ||| |||||||     
T  18704166 ttatgtataagttatttctataacaaaagataaataaagtcaagctatttttatataagctataagttgttttcataagctattacaaagatcttatgga 18704067  T
Q  165 aataagctaaaaacagcttaatagacatgt 194  Q
    |||||||| |||||| ||| ||||||||||    
T  18704066 aataagctgaaaacaactt-atagacatgt 18704038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 97 - 172
Target Start/End: Original strand, 41016150 - 41016226
Alignment:
Q  97 aaataagttcaaactgttt-catataagctataagttgttttcacaagctatcatccagagcttatgggaataagct 172  Q
    |||||| |||||||||||| ||||||||||||||||||||||||||||| |||||  | ||||||||  ||||||||    
T  41016150 aaataaattcaaactgttttcatataagctataagttgttttcacaagccatcatggaaagcttatgaaaataagct 41016226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 67 - 179
Target Start/End: Complemental strand, 12460131 - 12460017
Alignment:
Q  67 ttatttataagctatttctataacaaa-gataaa-taagttcaaactgttt-catataagctataagttgttttcacaagctatcatccagagcttatgg 163  Q
    |||| |||||||||||||||||||||| |||||| |||||| | | ||||| || |||| ||||||||||| ||||||||||||| | |||||||||||     
T  12460131 ttatgtataagctatttctataacaaaagataaaataagtt-atattgttttcaaataaactataagttgtcttcacaagctatcttgcagagcttatga 12460033  T
Q  164 gaataagctaaaaaca 179  Q
     ||||||| |||||||    
T  12460032 aaataagccaaaaaca 12460017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 113 - 184
Target Start/End: Complemental strand, 37588442 - 37588371
Alignment:
Q  113 tttcatataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagctta 184  Q
    ||||||||||||||||||||||||||| ||| |||  |  ||||||||||| |||||||| |||||||||||    
T  37588442 tttcatataagctataagttgttttcataagttattctggagagcttatggaaataagctgaaaacagctta 37588371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 113 - 199
Target Start/End: Complemental strand, 37690719 - 37690633
Alignment:
Q  113 tttcatataagctataagttgttttca-caagctatcatccagagcttatgggaataagctaaaaacagcttaatagacatgtcatag 199  Q
    |||||||||||||||||||||||||||  ||| ||| ||  ||||||||||| |||||||| ||||||||||| || |||||||||||    
T  37690719 tttcatataagctataagttgttttcataaagttattatggagagcttatggaaataagctgaaaacagcttatta-acatgtcatag 37690633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 60 - 177
Target Start/End: Complemental strand, 31030266 - 31030148
Alignment:
Q  60 taagtgattatttataagctatttctataacaaagataaataagttcaaactgtt-tcatataagctataagttgttttcacaagctatcatccagagct 158  Q
    |||||| |||| |||||||||||| |||||||||  |||||||  ||||  |||| ||||||||||||||||| ||||||  ||||| || |  ||||||    
T  31030266 taagtgcttatgtataagctatttttataacaaatttaaataaagtcaagttgttatcatataagctataagtagttttcctaagctgtcctggagagct 31030167  T
Q  159 tatgggaataagctaaaaa 177  Q
    ||||| |||||||| ||||    
T  31030166 tatggaaataagctgaaaa 31030148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 113 - 199
Target Start/End: Complemental strand, 37526281 - 37526196
Alignment:
Q  113 tttcatataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagcttaatagacatgtcatag 199  Q
    ||||||||||||||||||||||||||| ||| | |  |  ||||||||||| |||||||| ||||||||||| || |||||||||||    
T  37526281 tttcatataagctataagttgttttcataagttgttctggagagcttatggaaataagctgaaaacagcttatta-acatgtcatag 37526196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 113 - 177
Target Start/End: Original strand, 2568646 - 2568710
Alignment:
Q  113 tttcatataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaa 177  Q
    |||| |||||||||||||||||||||| ||||||||||  |||||| |||  |||||||||||||    
T  2568646 tttcgtataagctataagttgttttcataagctatcatggagagctaatgaaaataagctaaaaa 2568710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 184
Target Start/End: Original strand, 14295449 - 14295565
Alignment:
Q  71 ttataagctatttctataacaaa-gataaa-taagttcaaactgttt-catataagctataagttgttttcacaagctatcatccagagcttatgggaat 167  Q
    |||| |||||||||||||||||| |||||| |||  ||||||||||| ||||||||||||||| |||||||  |||||||| |  ||||||| | | | |    
T  14295449 ttattagctatttctataacaaaagataaaataaagtcaaactgttttcatataagctataagctgttttcgtaagctatcctggagagcttttagaagt 14295548  T
Q  168 aagctaaaaacagctta 184  Q
    ||||| |||||||||||    
T  14295549 aagctgaaaacagctta 14295565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 78 - 184
Target Start/End: Complemental strand, 28586886 - 28586777
Alignment:
Q  78 ctatttctataacaaa-gataaa-taagttcaaactgttt-catataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaa 174  Q
    |||||||||||||||| |||||| |||  ||||||||||| |||||||  |||||| |||||| || ||||||| |  ||||||||| | |||||||| |    
T  28586886 ctatttctataacaaaagataaaataaagtcaaactgttttcatataaattataagctgttttgacgagctatcctagagagcttatcgaaataagctga 28586787  T
Q  175 aaacagctta 184  Q
    ||||||||||    
T  28586786 aaacagctta 28586777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 113 - 169
Target Start/End: Original strand, 29054896 - 29054952
Alignment:
Q  113 tttcatataagctataagttgttttcacaagctatcatccagagcttatgggaataa 169  Q
    |||||||||||||||||||||||| || || |||||||  ||||||||||| |||||    
T  29054896 tttcatataagctataagttgtttccataaactatcatgtagagcttatggaaataa 29054952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 161
Target Start/End: Complemental strand, 39257524 - 39257421
Alignment:
Q  60 taagtgattatttataagctatttctataacaaa--gataaataagttcaaactgtttcatataagctataagttgttttcacaagctatcatccagagc 157  Q
    |||||| |||| |||| ||||| |||||||||||  |  ||||||  ||||||  |||||||||| |||||||||||||||| |||| |||||  |||||    
T  39257524 taagtgcttatgtatatgctatctctataacaaaaggtaaaataaagtcaaaccttttcatataaactataagttgttttcataagcaatcatggagagc 39257425  T
Q  158 ttat 161  Q
    ||||    
T  39257424 ttat 39257421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 160
Target Start/End: Complemental strand, 25079639 - 25079597
Alignment:
Q  117 atataagctataagttgttttcacaagctatcatccagagctta 160  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||    
T  25079639 atataagctataagttgttttca-aagctatcatcgagagctta 25079597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 160
Target Start/End: Complemental strand, 25137608 - 25137566
Alignment:
Q  117 atataagctataagttgttttcacaagctatcatccagagctta 160  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||    
T  25137608 atataagctataagttgttttca-aagctatcatcgagagctta 25137566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 183
Target Start/End: Complemental strand, 36542373 - 36542294
Alignment:
Q  105 tcaaactgtt-tcatataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagctt 183  Q
    |||||||||| |||||||||||||||| || || || |||||||| |  ||||||| ||| |||||| ||||||||||||    
T  36542373 tcaaactgttctcatataagctataagctgattccataagctatcctagagagcttgtggaaataagttaaaaacagctt 36542294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 183
Target Start/End: Complemental strand, 26209491 - 26209425
Alignment:
Q  117 atataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagctt 183  Q
    |||||||||||||| |||||||| ||||||||||  || | ||||| |||||| || ||||||||||    
T  26209491 atataagctataagctgttttcataagctatcatgaagtgtttatgcgaataatctgaaaacagctt 26209425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 198
Target Start/End: Original strand, 32172644 - 32172725
Alignment:
Q  116 catataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagcttaatagacatgtcata 198  Q
    ||||||||||||||| |||||||| ||||||||||  ||| || |||| |||||||| ||||  |||| || |||||||||||    
T  32172644 catataagctataagctgttttcataagctatcatgaagaactaatggaaataagctgaaaatggctt-atggacatgtcata 32172725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 184
Target Start/End: Complemental strand, 33533612 - 33533550
Alignment:
Q  122 agctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagctta 184  Q
    ||||||||| ||||||||||||||||| |  ||||||||||| |||||| | |||||| ||||    
T  33533612 agctataaggtgttttcacaagctatcttggagagcttatggaaataagttgaaaacaactta 33533550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 198
Target Start/End: Complemental strand, 10272513 - 10272429
Alignment:
Q  113 tttcatataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagcttaatagacatgtcata 198  Q
    |||| |||||||||||||||||||||| |||| ||| |  |||| |||||  |||||||| |||||| ||| | ||||||||||||    
T  10272513 tttcgtataagctataagttgttttcataagccatcttggagagtttatgaaaataagctgaaaacaactt-acagacatgtcata 10272429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 93
Target Start/End: Complemental strand, 14714977 - 14714944
Alignment:
Q  60 taagtgattatttataagctatttctataacaaa 93  Q
    ||||||||||| ||||||||||||||||||||||    
T  14714977 taagtgattatgtataagctatttctataacaaa 14714944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 139
Target Start/End: Complemental strand, 32059726 - 32059645
Alignment:
Q  60 taagtgattatttataagctatttctataacaaagataaa-taagttcaaactgttt-catataagctataagttgttttca 139  Q
    |||||| |||| |||||||| ||| | |||| |||||||| |||  ||||||||||| ||||||||||||||| ||||||||    
T  32059726 taagtgcttatgtataagctgtttttgtaactaagataaaataaagtcaaactgttttcatataagctataagctgttttca 32059645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 184
Target Start/End: Original strand, 12975279 - 12975405
Alignment:
Q  60 taagtgattatttataagctatttctataacaaagat--aaataagttcaaactgttt-catataagctataagttgttttcacaagctatcatccagag 156  Q
    |||||| |||| || || ||||| ||||||||||||   ||||||  ||||| ||||| ||||||||||||||| ||| |||| |||||||| |  ||||    
T  12975279 taagtgcttatatacaaactattcctataacaaagaataaaataaaatcaaattgttttcatataagctataagctgtgttcataagctatcttggagag 12975378  T
Q  157 cttatgggaataagctaaaaacagctta 184  Q
    ||||| |||||||| | |||||| ||||    
T  12975379 cttat-ggaataagttgaaaacaactta 12975405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 184
Target Start/End: Complemental strand, 26390888 - 26390801
Alignment:
Q  97 aaataagttcaaactgttt-catataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagctta 184  Q
    ||||||||| ||||||||| ||||||||||||||| || ||||  ||| |||| |  ||||||||||| |||||| | |||||||||||    
T  26390888 aaataagtt-aaactgttttcatataagctataagatggtttcctaagttatcctggagagcttatggaaataaggtgaaaacagctta 26390801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 177
Target Start/End: Complemental strand, 42181174 - 42181110
Alignment:
Q  113 tttcatataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaa 177  Q
    |||||||||||||||||||||||| |||||| |||| |  |||||| | || |||||||| ||||    
T  42181174 tttcatataagctataagttgtttgcacaagttatcctagagagctcaaggaaataagctgaaaa 42181110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 115 - 198
Target Start/End: Original strand, 11183535 - 11183617
Alignment:
Q  115 tcatataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagcttaatagacatgtcata 198  Q
    |||||| ||||||||| ||||||||||||||| | |  ||||||||||| |||||||| |||||||||| |||||||| |||||    
T  11183535 tcatattagctataagctgttttcacaagctaccctggagagcttatggaaataagctgaaaacagctt-atagacatatcata 11183617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 72 - 145
Target Start/End: Complemental strand, 11059814 - 11059745
Alignment:
Q  72 tataagctatttctataacaaagataaataagttcaaactgtttcatataagctataagttgttttcacaagct 145  Q
    |||||||||| |||||||||||    |||||| ||||| |||||||||||||||||| |||||||||| |||||    
T  11059814 tataagctatctctataacaaa----aataaggtcaaattgtttcatataagctataggttgttttcataagct 11059745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 112 - 184
Target Start/End: Original strand, 31705072 - 31705144
Alignment:
Q  112 gtttcatataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagctta 184  Q
    ||||||||||||||||||| |||||||| ||||| || |  |||| |||||| |||||||| |||||||||||    
T  31705072 gtttcatataagctataagctgttttcataagctgtccttgagagtttatggaaataagctgaaaacagctta 31705144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 73 - 163
Target Start/End: Complemental strand, 13561437 - 13561344
Alignment:
Q  73 ataagctatttctataacaaaga--taaataagttcaaactgttt-catataagctataagttgttttcacaagctatcatccagagcttatgg 163  Q
    ||||||||||||||||||| | |  |||||||  ||||| ||||| |||||||  ||||| ||||||||||||||||||||  |||||||||||    
T  13561437 ataagctatttctataacagaaaattaaataaagtcaaattgttttcatataaattataacttgttttcacaagctatcattgagagcttatgg 13561344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 113 - 195
Target Start/End: Complemental strand, 39561623 - 39561542
Alignment:
Q  113 tttcatataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagcttaatagacatgtc 195  Q
    |||||| ||| |||||||||||||||  ||||||||||  | ||||||||| |||||||| |||||||| ||| |||||||||    
T  39561623 tttcatctaaactataagttgttttcgtaagctatcatgaaaagcttatggaaataagctgaaaacagc-taacagacatgtc 39561542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 80 - 171
Target Start/End: Original strand, 10437837 - 10437930
Alignment:
Q  80 atttctataacaaa-gataaa-taagttcaaactgtttcatataagctataagttgttttcacaagctatcatccagagcttatgggaataagc 171  Q
    |||||||||||||| |||||| |||  ||||||||||| ||||||||| ||||| | ||||| |||||||| || ||||||||| | |||||||    
T  10437837 atttctataacaaaagataaaataaagtcaaactgttttatataagctttaagtaggtttcataagctatcttcgagagcttatagaaataagc 10437930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 113 - 198
Target Start/End: Original strand, 11795080 - 11795164
Alignment:
Q  113 tttcatataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagcttaatagacatgtcata 198  Q
    ||||||||||| |||||| || ||||| ||||||| ||  ||||||||||| |||||||| ||||||| || || |||||||||||    
T  11795080 tttcatataagttataagctgatttcataagctattatggagagcttatggaaataagctgaaaacaggtt-atggacatgtcata 11795164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 60 - 178
Target Start/End: Original strand, 29973013 - 29973134
Alignment:
Q  60 taagtgattatttataagctatttctataaca-aagat-aaataagttcaaact-gtttcatataagctataagttgttttcacaagctatcatccagag 156  Q
    |||||| |||| |||||||||||||| ||||| ||| | ||||||  |||||||  ||||| ||||||||||||||||||||| |||||||| |  ||||    
T  29973013 taagtgcttatatataagctatttctttaacacaaggtaaaataaagtcaaactattttcacataagctataagttgttttcataagctatccttgagag 29973112  T
Q  157 cttatgggaataagctaaaaac 178  Q
     |||||| ||||| || |||||    
T  29973113 tttatggaaataaactgaaaac 29973134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 184
Target Start/End: Original strand, 4558730 - 4558857
Alignment:
Q  60 taagtgattatttataagctatttctataacaaa-gataaat--aagttcaaactgtttcatataagctataagttgttttcacaagctatcatccagag 156  Q
    |||||| |||| |||||||||||||||||| ||| ||||||   ||||| ||    ||||||||| |||||||| ||||| || |||||||| |  ||||    
T  4558730 taagtgtttatgtataagctatttctataataaaagataaaataaagttaaattattttcatatatgctataagctgtttccataagctatcctagagag 4558829  T
Q  157 cttatgggaataagctaaaaacagctta 184  Q
    ||||||| ||||| ||||||||| ||||    
T  4558830 cttatggaaataaactaaaaacaactta 4558857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 120 - 180
Target Start/End: Complemental strand, 7918848 - 7918788
Alignment:
Q  120 taagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacag 180  Q
    |||||||||||||||||||| |||||||| |  ||||||| ||| |||||||| |||||||    
T  7918848 taagctataagttgttttcataagctatcttgtagagcttgtggaaataagctgaaaacag 7918788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 184
Target Start/End: Original strand, 31862436 - 31862552
Alignment:
Q  71 ttataagctatttctataacaaa-gataa-ataagttcaaactgtt-tcatataagctataagttgttttcacaagctatcatccagagcttatgggaat 167  Q
    ||||||| |||||| |||||||| ||||| ||||  ||||||| || || ||||||||||||| |||||||| ||| |||| |  ||||||||||  |||    
T  31862436 ttataagttatttcaataacaaaagataatataaagtcaaactattctcgtataagctataagatgttttcataagttatcctagagagcttatgaaaat 31862535  T
Q  168 aagctaaaaacagctta 184  Q
    ||||| |||||||||||    
T  31862536 aagctgaaaacagctta 31862552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 180
Target Start/End: Original strand, 7645966 - 7646033
Alignment:
Q  113 tttcatataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacag 180  Q
    |||||| |||||||||||||||||||| |||||| | |  | ||||||||| |||||||| |||||||    
T  7645966 tttcatgtaagctataagttgttttcataagctaacctgtaaagcttatggaaataagctgaaaacag 7646033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 148
Target Start/End: Complemental strand, 9834871 - 9834836
Alignment:
Q  113 tttcatataagctataagttgttttcacaagctatc 148  Q
    ||||||||||||||||||||||||||| ||||||||    
T  9834871 tttcatataagctataagttgttttcataagctatc 9834836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 184
Target Start/End: Original strand, 8062322 - 8062388
Alignment:
Q  118 tataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagctta 184  Q
    ||||||||||||| |||||||| |||||||| |  |||| |||||| |||||||| |||||| ||||    
T  8062322 tataagctataagctgttttcataagctatcttagagagattatggaaataagctgaaaacatctta 8062388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 147
Target Start/End: Original strand, 35869825 - 35869859
Alignment:
Q  113 tttcatataagctataagttgttttcacaagctat 147  Q
    ||||||||||||||||||||||||||| |||||||    
T  35869825 tttcatataagctataagttgttttcataagctat 35869859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 93
Target Start/End: Original strand, 8629041 - 8629074
Alignment:
Q  60 taagtgattatttataagctatttctataacaaa 93  Q
    |||||| |||||||||||||||||||||||||||    
T  8629041 taagtgcttatttataagctatttctataacaaa 8629074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 181
Target Start/End: Original strand, 21130609 - 21130670
Alignment:
Q  120 taagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagc 181  Q
    |||| ||||||||||| ||| || |||||||  ||||||||||| |||||||| ||||||||    
T  21130609 taagatataagttgttctcataaactatcattgagagcttatggaaataagctcaaaacagc 21130670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 198
Target Start/End: Complemental strand, 26473834 - 26473750
Alignment:
Q  113 tttcatataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagcttaatagacatgtcata 198  Q
    |||||||| || | ||||||||||||| |||||||| |  ||||||||||  |||||| |||||  ||||| ||||||||||||||    
T  26473834 tttcatatgagttgtaagttgttttcataagctatcctagagagcttatgaaaataagttaaaactagctt-atagacatgtcata 26473750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 177
Target Start/End: Original strand, 30013197 - 30013270
Alignment:
Q  105 tcaaactgtttc-atataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaa 177  Q
    |||||||||||| |||||||||||||| |||||||| |||||||| |  ||| || |||| |||||||| ||||    
T  30013197 tcaaactgtttccatataagctataagctgttttcataagctatcctgtagaactaatggaaataagctgaaaa 30013270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 31884582 - 31884619
Alignment:
Q  113 tttcatataagctataagttgttttcacaagctatcat 150  Q
    ||||||||||||||||| ||||||||| ||||||||||    
T  31884582 tttcatataagctataaattgttttcataagctatcat 31884619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 149
Target Start/End: Original strand, 37461089 - 37461166
Alignment:
Q  74 taagctatttctataacaaaga-taaataagttcaaactgtt-tcatataagctataagttgttttcacaagctatca 149  Q
    |||| |||||||| |||||||  |||||||  |||||||||| | |||||||||||| |||||||||| |||||||||    
T  37461089 taagttatttctacaacaaaggctaaataacgtcaaactgttattatataagctatatgttgttttcataagctatca 37461166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 183
Target Start/End: Complemental strand, 39551290 - 39551221
Alignment:
Q  114 ttcatataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagctt 183  Q
    |||||| ||||||||||||||||||| ||||| || |  |||||||||   |||||| ||||||||||||    
T  39551290 ttcatacaagctataagttgttttcataagctttcctggagagcttataaaaataagttaaaaacagctt 39551221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 139
Target Start/End: Original strand, 40157461 - 40157526
Alignment:
Q  72 tataagctatttctataacaaagataaataagttcaaactg-tttcatataagctataagttgttttca 139  Q
    ||||| |||||||||||||||||||||  ||||| |||||| ||| |||||||||||||| ||||||||    
T  40157461 tataaactatttctataacaaagataa--aagtt-aaactgttttaatataagctataagatgttttca 40157526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 163
Target Start/End: Original strand, 14482203 - 14482239
Alignment:
Q  127 taagttgttttcacaagctatcatccagagcttatgg 163  Q
    ||||||||||||||||||||||||  |||||||||||    
T  14482203 taagttgttttcacaagctatcatgaagagcttatgg 14482239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 113 - 184
Target Start/End: Complemental strand, 12564956 - 12564885
Alignment:
Q  113 tttcatataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagctta 184  Q
    ||||||||||||||||||||||||||| |||||||| |  || ||||| || |||||||| |||||||||||    
T  12564956 tttcatataagctataagttgttttcataagctatcttttagtgcttacggaaataagctgaaaacagctta 12564885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 113 - 184
Target Start/End: Complemental strand, 23902149 - 23902078
Alignment:
Q  113 tttcatataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagctta 184  Q
    ||||||||||||||||||||||||||| |||||||| |  ||||||||||| | |||||| |||||| ||||    
T  23902149 tttcatataagctataagttgttttcaaaagctatcttagagagcttatggaagtaagctgaaaacaactta 23902078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 60 - 179
Target Start/End: Original strand, 17269182 - 17269304
Alignment:
Q  60 taagtgattatttataagctatttctataacaaagat--aaataagttcaaactgttt-catataagctataagttgttttcacaagctatcatccagag 156  Q
    |||||| |||| |||||| |||||||| ||||||  |  ||||||  ||||| ||||| ||||||||| |||||||||||||| |||||||| |  ||||    
T  17269182 taagtgcttatgtataagttatttctagaacaaaagtgaaaataaagtcaaattgttttcatataagcaataagttgttttcataagctatcctggagag 17269281  T
Q  157 cttatgggaataagctaaaaaca 179  Q
    |||| || |||||| ||||||||    
T  17269282 cttacggtaataagttaaaaaca 17269304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 179
Target Start/End: Original strand, 25479524 - 25479635
Alignment:
Q  71 ttataagctatttctataac-aaagataaa-taagttcaaactgt-ttcatataagctataagttgttttcacaagctatcatccagagcttatgggaat 167  Q
    ||||||| | |||||||||| ||||||||| |||  ||||| ||| |||||||| ||||||||||||||||| |||||||| |  ||||||||||  |||    
T  25479524 ttataagatctttctataaccaaagataaaataacgtcaaattgtcttcatataggctataagttgttttcataagctatcctagagagcttatgaaaat 25479623  T
Q  168 aagctaaaaaca 179  Q
    ||||| ||||||    
T  25479624 aagctgaaaaca 25479635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 62 - 207
Target Start/End: Complemental strand, 43029537 - 43029391
Alignment:
Q  62 agtgattatttataagctatttctataacaaa-gataaa-taagttcaaactgtttcatataagctataagttgttttcacaagctatcatccagagctt 159  Q
    |||| |||| ||||| ||||||||| |||||| |||||| ||| ||||||||||||| |||||| ||| || | |||||| |||||||  |  | |||||    
T  43029537 agtgcttatgtataacctatttctacaacaaaagataaaataaattcaaactgtttcctataagttatgaggtattttcataagctattctttaaagctt 43029438  T
Q  160 atgggaataagctaaaaacagcttaatagacatgtcatagaatgtttt 207  Q
    |||| |||||||| |||| ||||| |||||||||| ||| | ||||||    
T  43029437 atggaaataagctgaaaatagctt-atagacatgtaataaactgtttt 43029391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 198
Target Start/End: Original strand, 4622044 - 4622165
Alignment:
Q  79 tatttctataacaaa-gat-aaataagttcaaactgttt-catataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaa 175  Q
    ||||||||||||||| ||| |||| | |||||||| ||| ||||||||||||||| ||||| || | |||||| |  ||||||| ||  |||||||||||    
T  4622044 tatttctataacaaaagatcaaatgaattcaaactcttttcatataagctataagctgtttccatatgctatcttggagagcttgtgaaaataagctaaa 4622143  T
Q  176 aacagcttaatagacatgtcata 198  Q
    |||||||| || |||||||||||    
T  4622144 aacagctt-atggacatgtcata 4622165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 118 - 179
Target Start/End: Complemental strand, 35590969 - 35590908
Alignment:
Q  118 tataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaaca 179  Q
    |||||||||||||| | ||||| ||||||||||  ||||||||||| |||||||| ||||||    
T  35590969 tataagctataagtcgatttcataagctatcatggagagcttatggaaataagctgaaaaca 35590908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 115 - 184
Target Start/End: Complemental strand, 39348047 - 39347978
Alignment:
Q  115 tcatataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagctta 184  Q
    ||||| ||||||||||||||||||| || ||||| | || ||||||||| |||||||| |||||| ||||    
T  39348047 tcatacaagctataagttgttttcataaactatcctgcaaagcttatggaaataagctgaaaacaactta 39347978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 67 - 150
Target Start/End: Complemental strand, 17423070 - 17422983
Alignment:
Q  67 ttatttataagctatttctataacaaa--gataaa-taagttcaaactg-tttcatataagctataagttgttttcacaagctatcat 150  Q
    |||| |||||||| |||||||||||||  |||||| |||  |||| ||| ||||||||||||||||||||||||||| | ||||||||    
T  17423070 ttatgtataagctttttctataacaaaacgataaaataaagtcaagctgatttcatataagctataagttgttttcatatgctatcat 17422983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 113 - 161
Target Start/End: Complemental strand, 25005879 - 25005831
Alignment:
Q  113 tttcatataagctataagttgttttcacaagctatcatccagagcttat 161  Q
    ||||||||||||||||||||||||||| |||||||| |  |||||||||    
T  25005879 tttcatataagctataagttgttttcataagctatcctggagagcttat 25005831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 184
Target Start/End: Original strand, 30257662 - 30257742
Alignment:
Q  105 tcaaactgtttc-atataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagctta 184  Q
    |||||||||||| ||||||||| ||||||||||||| || ||||| |  || |||||| | |||||||| |||||||||||    
T  30257662 tcaaactgtttccatataagctttaagttgttttcataaactatcctggagggcttatagaaataagctgaaaacagctta 30257742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 184
Target Start/End: Original strand, 45205059 - 45205127
Alignment:
Q  116 catataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagctta 184  Q
    ||||||||||| |||||||||||| ||||||||||  |||| | |||| |||||||| |||||| ||||    
T  45205059 catataagctagaagttgttttcataagctatcatgtagagttcatggaaataagctgaaaacaactta 45205127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 139
Target Start/End: Original strand, 5160342 - 5160420
Alignment:
Q  61 aagtgattatttataagctatttctataacaa-agataaataagttcaaactgtttcatataagctataagttgttttca 139  Q
    ||||| |||| ||||||||||||||||||||| | || |||||  ||||||||||| ||||||| |||||| ||||||||    
T  5160342 aagtgtttatgtataagctatttctataacaacatat-aataaagtcaaactgttttatataagttataagctgttttca 5160420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 148
Target Start/End: Complemental strand, 25006116 - 25006081
Alignment:
Q  113 tttcatataagctataagttgttttcacaagctatc 148  Q
    ||||||||||||||||||||||||||| ||||||||    
T  25006116 tttcatataagctataagttgttttcataagctatc 25006081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 27887197 - 27887134
Alignment:
Q  116 catataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaaca 179  Q
    |||||||||||||||||||||||| || |||||||  ||||| |||   |||||||||||||||    
T  27887197 catataagctataagttgttttcataaactatcatggagagcatataaaaataagctaaaaaca 27887134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 183
Target Start/End: Complemental strand, 7218156 - 7218086
Alignment:
Q  113 tttcatataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagctt 183  Q
    ||||||||||||||||||||||||||| || ||||| |  ||| ||||||  |||||| | ||||||||||    
T  7218156 tttcatataagctataagttgttttcataacctatcctggagaacttatgaaaataagttgaaaacagctt 7218086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 150
Target Start/End: Original strand, 8130415 - 8130461
Alignment:
Q  105 tcaaactgttt-catataagctataagttgttttcacaagctatcat 150  Q
    ||||||||||| || ||||||||||||||||||||| ||||||||||    
T  8130415 tcaaactgttttcacataagctataagttgttttcataagctatcat 8130461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 127
Target Start/End: Original strand, 23895268 - 23895338
Alignment:
Q  60 taagtgattatttataagctatttctataac-aaagat-aaataagttcaaactgtt-tcatataagctat 127  Q
    ||||| ||||| ||||||||||||||||||| |||||| |||||| ||||||||||| ||||||| |||||    
T  23895268 taagttattatgtataagctatttctataacaaaagataaaataaattcaaactgttctcatatatgctat 23895338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 4078231 - 4078194
Alignment:
Q  113 tttcatataagctataagttgttttcacaagctatcat 150  Q
    |||||||||| |||||||||||||||| ||||||||||    
T  4078231 tttcatataatctataagttgttttcataagctatcat 4078194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 198
Target Start/End: Original strand, 4549222 - 4549302
Alignment:
Q  117 atataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagcttaatagacatgtcata 198  Q
    |||||||||||||| || |||||||| |||||    | ||||||||| |||||||| |||||| ||| ||||||||||||||    
T  4549222 atataagctataagctgctttcacaaactatccaggatagcttatggaaataagctgaaaacaactt-atagacatgtcata 4549302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 134
Target Start/End: Original strand, 15360822 - 15360903
Alignment:
Q  56 taattaagtgattatttataagctatttctataacaaa-gataaa-taagttcaaactgttt-catataagctataagttgt 134  Q
    |||| ||||| |||| ||| || ||||||||||||||| |||||| |||  ||||||||||| |||||||||||||||||||    
T  15360822 taatcaagtgtttatgtattagttatttctataacaaaagataaaataaagtcaaactgttttcatataagctataagttgt 15360903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 169
Target Start/End: Original strand, 15515484 - 15515585
Alignment:
Q  71 ttataagctatttctataac-aaagata-aataagttcaaactgttt-catataagctataagttgttttcacaagctatcatccagagcttatgggaat 167  Q
    |||||||||||||| ||||  ||||||| |||||  ||||| ||||| | |||||||||||||||||||||| ||| ||||||  | ||||||||| |||    
T  15515484 ttataagctatttccataaggaaagatagaataaaatcaaaatgttttcgtataagctataagttgttttcataagttatcatggatagcttatggaaat 15515583  T
Q  168 aa 169  Q
    ||    
T  15515584 aa 15515585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 198
Target Start/End: Complemental strand, 27963452 - 27963368
Alignment:
Q  113 tttcatataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagcttaatagacatgtcata 198  Q
    ||||||| ||| | ||||||||||||| ||||||| ||  |||||||||   ||||||||||||||| ||| || |||||||||||    
T  27963452 tttcataaaagttctaagttgttttcataagctattatggagagcttatataaataagctaaaaacaactt-atggacatgtcata 27963368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 146
Target Start/End: Original strand, 29723441 - 29723510
Alignment:
Q  79 tatttctataacaaagataaa-taagttcaaactgttt-catataagctataagttgttttcacaagcta 146  Q
    |||||||||||| |||||||| |||  ||||||| ||| |||||| ||||||||||| ||||||||||||    
T  29723441 tatttctataacgaagataaaataaactcaaactattttcatatatgctataagttgctttcacaagcta 29723510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 184
Target Start/End: Original strand, 39777613 - 39777722
Alignment:
Q  78 ctatttctataacaaa-gata-aataagttcaaactg-tttcatataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaa 174  Q
    |||||||||||||||| |||| |||||  |||||||| ||||||| |||||||| | |||||||  ||| ||| ||  |||||||| || ||||||||||    
T  39777613 ctatttctataacaaaagatagaataaagtcaaactgctttcatacaagctatatgatgttttcttaagttataatgaagagcttaaggaaataagctaa 39777712  T
Q  175 aaacagctta 184  Q
    ||||| ||||    
T  39777713 aaacatctta 39777722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 150
Target Start/End: Complemental strand, 42556709 - 42556676
Alignment:
Q  117 atataagctataagttgttttcacaagctatcat 150  Q
    ||||||||||||||||||||||| ||||||||||    
T  42556709 atataagctataagttgttttcataagctatcat 42556676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 139
Target Start/End: Complemental strand, 6110302 - 6110223
Alignment:
Q  60 taagtgattatttataagctatttctataacaaagataaataagttcaaactg-tttcatataagctataagttgttttca 139  Q
    |||||| |||| |||||||||||||||||| | ||| ||| || |||||| || |||||| |||| |||||||||||||||    
T  6110302 taagtgcttatgtataagctatttctataa-acagaaaaacaaattcaaattgttttcatttaaggtataagttgttttca 6110223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 197
Target Start/End: Complemental strand, 6231953 - 6231815
Alignment:
Q  60 taagtgattatttataagctatttctataacaaagataaataagttcaaactg--tttcatataagctataagttgttttcacaagctatcatccagagc 157  Q
    |||||| |||| ||| || | ||| |||||| |||||||||||  ||||||||  |||||||||| ||||||| |||||||  |||||| | |  ||| |    
T  6231953 taagtgcttatgtattaggtctttttataaccaagataaataaagtcaaactgtttttcatataatctataagctgttttcgtaagctaacctgaagaac 6231854  T
Q  158 ttatgggaataagctaaaaacagcttaatagacatgtcat 197  Q
    |||| | |||||||| ||||||| || || ||||||||||    
T  6231853 ttatagaaataagctgaaaacag-tttatggacatgtcat 6231815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 198
Target Start/End: Complemental strand, 28689536 - 28689450
Alignment:
Q  113 tttcatataagctataagttgttttc--acaagctatcatccagagcttatgggaataagctaaaaacagcttaatagacatgtcata 198  Q
    ||||||||||||||||||||||||||  | |||||||| |  | ||||||||  |||||||| |||||| ||| || |||||||||||    
T  28689536 tttcatataagctataagttgttttcatataagctatcttggaaagcttatgaaaataagctgaaaacaactt-atggacatgtcata 28689450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 179
Target Start/End: Complemental strand, 30259610 - 30259502
Alignment:
Q  75 aagctatttctataacaaag-ataaa-taagttcaaactg-tttcatataagctataagttgttttcacaa-gctatcatccagagcttatgggaataag 170  Q
    |||||||||||||||||||  ||||| |||  |||||||| ||| |||||||||||||| ||||| || || ||||||||  ||||||||||| ||||||    
T  30259610 aagctatttctataacaaaatataaaataaagtcaaactgctttgatataagctataagctgtttgcataaagctatcatggagagcttatggaaataag 30259511  T
Q  171 ctaaaaaca 179  Q
     | ||||||    
T  30259510 ttgaaaaca 30259502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 179
Target Start/End: Original strand, 33527422 - 33527482
Alignment:
Q  119 ataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaaca 179  Q
    ||||||||||| |||||||||  |||| ||||  |||||||||||| ||||||| ||||||    
T  33527422 ataagctataaattgttttcattagctgtcatggagagcttatgggtataagctgaaaaca 33527482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 185
Target Start/End: Original strand, 33976674 - 33976746
Alignment:
Q  113 tttcatataagctataagttgttttcacaagctatcatccagagcttatgggaataagctaaaaacagcttaa 185  Q
    ||||||||||| ||||||||||||||  || ||||| |  ||||||||||| |||||| | |||| |||||||    
T  33976674 tttcatataagttataagttgttttcttaacctatcctagagagcttatggaaataagttgaaaaaagcttaa 33976746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 129
Target Start/End: Complemental strand, 45999414 - 45999354
Alignment:
Q  72 tataagctatttctataac-aaagataa-ataagttcaaactg-tttcatataagctataa 129  Q
    ||||||||||||||||||| |||||||| ||||  |||||||| |||||||||||||||||    
T  45999414 tataagctatttctataacaaaagataagataaagtcaaactgctttcatataagctataa 45999354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 148
Target Start/End: Original strand, 27508 - 27599
Alignment:
Q  60 taagtgattatttataagctatttctataaca-aagataaa-taagttcaaactgttt-catataagctataagttgttttcacaagctatc 148  Q
    |||||| |||| |||||| ||||||||||||| |||||||| |||  ||||| ||||| ||||||| |||||||||||||||| || |||||    
T  27508 taagtgcttatgtataagttatttctataacagaagataaaataaagtcaaattgttttcatataaactataagttgttttcataaactatc 27599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 147
Target Start/End: Original strand, 42601 - 42638
Alignment:
Q  110 ctgtttcatataagctataagttgttttcacaagctat 147  Q
    |||||||||||||||||| ||||||||||| |||||||    
T  42601 ctgtttcatataagctattagttgttttcataagctat 42638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University