View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4278_high_4 (Length: 446)
Name: NF4278_high_4
Description: NF4278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4278_high_4 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 166; Significance: 1e-88; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 229 - 430
Target Start/End: Original strand, 10721080 - 10721281
Alignment:
| Q |
229 |
catgcctcttttctattggccaagacaacatatgtcactttctcgttggcgacaccacctcatctacctctttctttcacaaaagtagttttgtaaattt |
328 |
Q |
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||||||||||||||||||||||||||||||| |||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
10721080 |
catgcctcttttctattggccaagacaacatttgtctctttctcattggtcacaccacctcatctacctctttctttcacaaaagtagttttgtatattt |
10721179 |
T |
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| Q |
329 |
actttccatcaaacccatatcactcaaatgtttctctccgcacactctcaaatccataccacttttaccatcactactatgaacaagatgatgatagtga |
428 |
Q |
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| T |
10721180 |
actttccatcaaacccatatcactcaaatgtttctcttcgcacactctcaaacccataccactttcaccatcactactatgaacaagatgatgatagtga |
10721279 |
T |
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| Q |
429 |
tg |
430 |
Q |
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|| |
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| T |
10721280 |
tg |
10721281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 10 - 187
Target Start/End: Original strand, 10720659 - 10720836
Alignment:
| Q |
10 |
attattctcagtgtaagtaataaatagataatgaagctaaatacgattctacaacttttttatgattctaaaactaggttgactaaattcatgttttcca |
109 |
Q |
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| T |
10720659 |
attattatcagtgtaagtaatatatagataatgaagctaaatacgattctacaacttttttatgattctaaaactaggttgactaaattcatgttttcca |
10720758 |
T |
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| Q |
110 |
tcaatagttgattaaacacttgattgtatgaaatttataataaaactaaataggttccggaggtaatcagatgtcaaa |
187 |
Q |
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| T |
10720759 |
tcaatagttgattaaacacttgattgtatgaaatttataataaaactaaataggttccagaggtaatcagatatcaaa |
10720836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 233 - 404
Target Start/End: Complemental strand, 10721445 - 10721274
Alignment:
| Q |
233 |
cctcttttctattggccaagacaacatatgtcactttctcgttggcgacaccacctcatctacctctttctttcacaaaagtagttttgtaaatttactt |
332 |
Q |
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|||||||| |||||| ||||||||||||||| |||||||||||| || | ||||| ||||||||||||||||||||||| |||||| |||||||| || |
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| T |
10721445 |
cctcttttatattggtgaagacaacatatgtctctttctcgttggggatagcaccttgtctacctctttctttcacaaaagcagttttataaatttattt |
10721346 |
T |
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| Q |
333 |
tccatcaaacccatatcactcaaatgtttctctccgcacactctcaaatccataccacttttaccatcacta |
404 |
Q |
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| T |
10721345 |
tccatcaaaaccatatcactcaaatgtttctctccgcagactctcaaacccataccactttcgccatcacta |
10721274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 189 - 227
Target Start/End: Original strand, 10720936 - 10720974
Alignment:
| Q |
189 |
gcaaggagaacacagtaagaggcgtagaacctttagggt |
227 |
Q |
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| T |
10720936 |
gcaaggagaacacagtaagaggcgtagaacctttagggt |
10720974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 229 - 347
Target Start/End: Complemental strand, 124460 - 124343
Alignment:
| Q |
229 |
catgcctcttttctattggccaagacaacatatgtcactttctcgttggcgacaccacctcatctacctctttctttcacaaaagtagttttgtaaattt |
328 |
Q |
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||||||||||||||||||| ||||||||||| |||| ||||||| ||||| |||||||||||||||| | | |||||| |||| | ||| | ||||||| |
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| T |
124460 |
catgcctcttttctattggtcaagacaacatgtgtctctttctcattggccacaccacctcatctacgtttctctttcttaaaa-tggttctataaattt |
124362 |
T |
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| Q |
329 |
actttccatcaaacccata |
347 |
Q |
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|||||||||||||| |||| |
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| T |
124361 |
actttccatcaaactcata |
124343 |
T |
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