View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4278_low_12 (Length: 291)
Name: NF4278_low_12
Description: NF4278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4278_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 31 - 216
Target Start/End: Original strand, 44881430 - 44881615
Alignment:
| Q |
31 |
agtagtggagtatcttctcctaaccatannnnnnncatctaaaagactcgaatccaagattttgcttaagggatctatgtccaattttactcggaccaat |
130 |
Q |
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| T |
44881430 |
agtagtgaagtatcttctcctaaccatatttttttcatctacaagactcgaatccgagattttgcttaagggatctatgtccaattttactcggaccaat |
44881529 |
T |
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| Q |
131 |
gtaatactactactaacattttttaatctcgtgaattagtcaatagagttctatatttagtgactgatgcagtataaattaatatt |
216 |
Q |
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| T |
44881530 |
gtaatactactacaaacattttttaatctcgtgaattagtcaatagagttctatatttagtgactgatgcagtataaattaatatt |
44881615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 44881618 - 44881659
Alignment:
| Q |
241 |
atgcaaaaagagagtatgttagtgcagaaagtagtgatgatg |
282 |
Q |
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| T |
44881618 |
atgcaaaaagagagtatgatagtgcagaaagtagtgatgatg |
44881659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 4686508 - 4686475
Alignment:
| Q |
1 |
tgaaaattgaagattcaaagcataaaaagtagta |
34 |
Q |
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| T |
4686508 |
tgaaaattgaagattcaaagcatcaaaagtagta |
4686475 |
T |
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