View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4278_low_13 (Length: 281)
Name: NF4278_low_13
Description: NF4278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4278_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 33 - 202
Target Start/End: Complemental strand, 22513923 - 22513754
Alignment:
| Q |
33 |
ttataataagagtattgatctttaatcccacgaattataatttaatgaaatgcaggaatgtcgatttttcttgttatattattggttggtccaaaacttc |
132 |
Q |
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| T |
22513923 |
ttataataagagtagtgatgtttaatcccacgaattacactttaatgaaatgcaggaatgtcgatttttcttgttatattattggttggtccaaaacttc |
22513824 |
T |
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| Q |
133 |
aaacctgtttttaaggaaatcatgagagtatggatgaaaaactatcatccatgcaaccttacaaaacaat |
202 |
Q |
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| T |
22513823 |
aaatcttcttttaaggaaatcatgagagtatggatgaaaaactatcacccatgcaaccttacaaaacaat |
22513754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 30 - 185
Target Start/End: Complemental strand, 22528075 - 22527921
Alignment:
| Q |
30 |
gtattataataagagtattgatctttaatcccacgaattataatttaatgaaatgcaggaatgtcgatttttcttgttatattattggttggtccaaaac |
129 |
Q |
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| T |
22528075 |
gtattgtaataagagtagtgatttttaatgccacgaaatacactttaatgaaatgcaagaatctcgatttttcttgttatattattggttggtctaaaac |
22527976 |
T |
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| Q |
130 |
ttcaaacctgtttttaaggaaatcatgagagtatggatgaaaaactatcatccatg |
185 |
Q |
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| T |
22527975 |
tttaaatctgtttttaaggaaatcatggaagtttgggtg-aaaactatcatccatg |
22527921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 16 - 156
Target Start/End: Complemental strand, 22495604 - 22495469
Alignment:
| Q |
16 |
caattgtcgtgtatgtattataataagagtattgatctttaatcccacgaattataatttaatgaaatgcaggaatgtcgatttttcttgttatattatt |
115 |
Q |
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| T |
22495604 |
caattgtcgtgtatgtattataataagagtagtgatgtttaataccacgaaatacactttaatgaaatgcaagaatgtcgatttttcttg-----ttatt |
22495510 |
T |
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| Q |
116 |
ggttggtccaaaacttcaaacctgtttttaaggaaatcatg |
156 |
Q |
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| T |
22495509 |
ggtttgtccaaaacttcaaatctgtttttaagaaaatcatg |
22495469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 40 - 156
Target Start/End: Complemental strand, 22602691 - 22602575
Alignment:
| Q |
40 |
aagagtattgatctttaatcccacgaattataatttaatgaaatgcaggaatgtcgatttttcttgttatattattggttggtccaaaacttcaaacctg |
139 |
Q |
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| T |
22602691 |
aagagtagtgatgtttaatgccacgaattacactttaataaaatgtaagaatgttgatttttcttgttatactactggttggtccaaaagtccaaatctg |
22602592 |
T |
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| Q |
140 |
tttttaaggaaatcatg |
156 |
Q |
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| T |
22602591 |
tttttaagaaaatcatg |
22602575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 223 - 275
Target Start/End: Complemental strand, 22513684 - 22513632
Alignment:
| Q |
223 |
tattaatcaagttcatagattctatcatgcacacctcttttctttcttctctc |
275 |
Q |
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| T |
22513684 |
tattaatcaagttcatagattctatcatgcacacctcttttctttcttctctc |
22513632 |
T |
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