View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4278_low_14 (Length: 256)
Name: NF4278_low_14
Description: NF4278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4278_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 15 - 249
Target Start/End: Original strand, 18632913 - 18633147
Alignment:
| Q |
15 |
cacagagaccatacctgtttgtataaaaagcacatttatttgcaattttacactgatcttgctacacaaatcaaaccacattattgatacgcgtcaaaat |
114 |
Q |
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| T |
18632913 |
cacagagaccatacctatttgtataaaaagcacatttatttgcaattttacactgatcttgcaacacaaatcaaaccacattattgatacgcatcaaaat |
18633012 |
T |
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| Q |
115 |
ataacctatgataatattatgcactaattagatcaaaatttacactagctttgcaacataaaccataccataatattatacctatgataatccaaatcat |
214 |
Q |
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| T |
18633013 |
ataacctatgataatattatgcactaattagatcaaaatttacactaactttgcaacataaaccataccataatattatacctatgataatccaaatcat |
18633112 |
T |
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| Q |
215 |
gcaatatatctgaaacaaaacatttagtgatgatg |
249 |
Q |
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| T |
18633113 |
gcaatatatctgaaacaaaacatttagtggtgatg |
18633147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 243
Target Start/End: Original strand, 28975430 - 28975505
Alignment:
| Q |
168 |
caacataaaccataccataatattatacctatgataatccaaatcatgcaatatatctgaaacaaaacatttagtg |
243 |
Q |
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| T |
28975430 |
caacacaaatcaaaccataatattatacatatgataatccaaatcgtgcaaaatattcaaaacaaaatatttagtg |
28975505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 224
Target Start/End: Complemental strand, 33270570 - 33270454
Alignment:
| Q |
108 |
tcaaaatataacctatgataatattatgcactaattagatcaaaatttacactagctttgcaacataaaccataccataa-tattatacctatgataatc |
206 |
Q |
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| T |
33270570 |
tcaaaacataaggtatgataatatttt-cattaattaaatcaaaatttacattgattttgcaacacaaatcaaaccataaatatcatacatatgataatc |
33270472 |
T |
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| Q |
207 |
caaatcatgcaatatatc |
224 |
Q |
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| T |
33270471 |
caaatcttgcaaaatatc |
33270454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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