View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4278_low_15 (Length: 236)
Name: NF4278_low_15
Description: NF4278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4278_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 16 - 226
Target Start/End: Original strand, 47304880 - 47305090
Alignment:
| Q |
16 |
ctttcttcatgagtaaggaaatgtttttcctttatgtgtttgtgttgtactgttttagattacaatagtagcaatcatcatgagatgttgtgtttgtgct |
115 |
Q |
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| T |
47304880 |
ctttcttcatgagtaaggaaatgtttttcctttatgtgtttgtgttgtactgttttagattgcaatagtagcaatcatcatgagatgttgtgtttgtgtt |
47304979 |
T |
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| Q |
116 |
actaattactattactaataataatgatttcttgtgatcatgtacttgtgagttaattagtaagtgtattgtgtatttataaagtttattacctactcat |
215 |
Q |
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| T |
47304980 |
actaattactattactaataataatgatttcttgtgatcatgtacttgtgagttaattagtaagtgtattgtgtaattataaagtttattacctactcgt |
47305079 |
T |
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| Q |
216 |
tttcttctcac |
226 |
Q |
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|||||| |||| |
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| T |
47305080 |
tttcttttcac |
47305090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 16 - 206
Target Start/End: Original strand, 47301994 - 47302181
Alignment:
| Q |
16 |
ctttcttcatgagtaaggaaatgtttttcctttatgtgtttgtgttgtactgttttagattacaatagtagcaatcatcatgagatgttgtgtttgtgct |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| | |
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| T |
47301994 |
ctttcttcatgagtaaggaaatgtttttcctttatgtgtttgtgttgtactgttttagattgcaatagtagcaatcatcatgagatgtt---tttgtgtt |
47302090 |
T |
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| Q |
116 |
actaattactattactaataataatgatttcttgtgatcatgtacttgtgagttaattagtaagtgtattgtgtatttataaagtttatta |
206 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
47302091 |
actaattactattactaataataattatttcttgtgatcatgtacttgtgagttaattagtaagtgtattgtgtaattataaagttcatta |
47302181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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