View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4278_low_5 (Length: 431)
Name: NF4278_low_5
Description: NF4278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4278_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 9 - 329
Target Start/End: Complemental strand, 29941680 - 29941360
Alignment:
| Q |
9 |
gagatgaaggagtttgttgtaaattccaaattccaaataatgatcttgagaatctgtcacaggtgggnnnnnnnggaccataattccatgaacatgacaa |
108 |
Q |
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| T |
29941680 |
gagatgaaggagtttgttgtaaattccaaattccaaataatgatcttgagaatctgtcacaggtgggaaaaaaaggaccataattccatgaacatgacaa |
29941581 |
T |
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| Q |
109 |
gggaaacttgcctggtaaatctttcctgtagttatgttattatcacgggtcaacttgacatccataaagcgctcatagtttccaagatccaggtccacct |
208 |
Q |
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| T |
29941580 |
gggaaacttgcctggtaaatctttcctgtagttatgttattatcacgggtcaacttgacatccataaagcgctcatagtttccaagatccaggtccacct |
29941481 |
T |
|
| Q |
209 |
ttcaaccaaaataaagagtcaagattcttcnnnnnnngttcttacacaaaaacacagctttttaacaatttattactgagnnnnnnnnnttgcataaagt |
308 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29941480 |
ttcaaccaaaataaagagtcaagattcttctttttttgttcttacacaaaaacacagctttttaacaatttattactgagaaattttttttgcataaagt |
29941381 |
T |
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| Q |
309 |
tggtacaatatttttctttca |
329 |
Q |
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||||||||||||||||||||| |
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| T |
29941380 |
tggtacaatatttttctttca |
29941360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 209
Target Start/End: Complemental strand, 26519359 - 26519269
Alignment:
| Q |
119 |
cctggtaaatctttcctgtagttatgttattatcacgggtcaacttgacatccataaagcgctcatagtttccaagatccaggtccacctt |
209 |
Q |
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|||| ||||| ||||| ||||| |||||||| || |||||||| |||| |||| || || ||||||||||||||||| ||||| ||||| |
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| T |
26519359 |
cctgataaatttttccagtagtgatgttattgtcgcgggtcaatttgatgtccaagaaacgttcatagtttccaagatcaaggtcaacctt |
26519269 |
T |
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